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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676731318 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | NAC | ||||||||
Protein Properties | Length: 372aa MW: 40720.7 Da PI: 4.942 | ||||||||
Description | NAC family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | NAM | 98 | 1.4e-30 | 56 | 197 | 1 | 128 |
NAM 1 lppGfrFhPtdeelvveyLkkkvegkk......lelee.....vikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknra.......tksgy 82 lp+G++F+Ptde++v e+L++k+ + e v ++v+i++++P++Lp ++++ + +fF+k+ ++y tg+rk+r+ + + 676731318 56 LPKGVKFEPTDEDIV-EFLEAKCGIGGsephvlI---EefirpVTEDVGINYTHPENLP-GANKDGVSAFFFHKTVQAYGTGQRKRRKitptclnEEPVR 150 799************.9*****876664566552...13445467889***********.445566789******************7556555444788 PP NAM 83 WkatgkdkevlskkgelvglkktLvfykg..rapkgektdWvmheyrl 128 W++tg++k+vl g + g+kk++v+yk + +k+ek++Wv+h+y+l 676731318 151 WHKTGRTKPVLL-AGVQRGCKKIMVLYKSarKGSKPEKSNWVLHQYHL 197 ************.999***********5433666778*********98 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF101941 | 2.09E-35 | 41 | 215 | IPR003441 | NAC domain |
PROSITE profile | PS51005 | 29.391 | 56 | 215 | IPR003441 | NAC domain |
Pfam | PF02365 | 7.6E-13 | 57 | 197 | IPR003441 | NAC domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 372 aa Download sequence Send to blast |
MATSAWIVDG RGIATKVKNA SVSSALQIKD CGASIQCPNC SYRIDNSNVL IPWPGLPKGV 60 KFEPTDEDIV EFLEAKCGIG GSEPHVLIEE FIRPVTEDVG INYTHPENLP GANKDGVSAF 120 FFHKTVQAYG TGQRKRRKIT PTCLNEEPVR WHKTGRTKPV LLAGVQRGCK KIMVLYKSAR 180 KGSKPEKSNW VLHQYHLGTE GKEIGDYVVS KITYQQQKLG DEGESSGLRG GPTTPMTNTP 240 TPPRPVDGVA KDEDIFDDDK MFDPFAEGLD SIPEAALGRM WSKKARVEED MGVDLSEDNL 300 TCNESIEASS LWENQLHPNP SLGTFGELDG FALSDLENAD LGTPPDLLTR NAREEEEEEG 360 GGGGGKSRNV YK |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor regulating the transcriptional activation response to gamma irradiation (PubMed:19549833). Required for stem-cell death induced by UVB or by gamma irradiation (PubMed:20634150). Not required for ATM activation, but participates in pathways governed by both ATM and ATR sensor kinases (PubMed:19549833). Involved in DNA damage response (DDR) system that regulates cell cycle arrest (PubMed:24399300). Functional homolog of animal p53 (PubMed:24736489). Regulates SMR5 and SMR7 transcription (PubMed:24399300). Regulates DNA repair and cytokinin signaling separately and plays a key role in controlling lateral root formation under genotoxic stress. {ECO:0000269|PubMed:19549833, ECO:0000269|PubMed:20634150, ECO:0000269|PubMed:24399300, ECO:0000305|PubMed:24736489}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676731318 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Not induced by zeocin or ionizing radiation treatment. {ECO:0000269|PubMed:23907539}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | ATAC009325 | 1e-128 | AC009325.8 Arabidopsis thaliana chromosome III BAC F4P13 genomic sequence, complete sequence. | |||
GenBank | CP002686 | 1e-128 | CP002686.1 Arabidopsis thaliana chromosome 3, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_002884273.2 | 0.0 | SUPPRESSOR OF GAMMA RESPONSE 1 isoform X1 | ||||
Swissprot | Q6NQK2 | 1e-74 | NAC8_ARATH; SUPPRESSOR OF GAMMA RESPONSE 1 | ||||
TrEMBL | D7L9N2 | 0.0 | D7L9N2_ARALL; Predicted protein | ||||
STRING | Al_scaffold_0003_51 | 0.0 | (Arabidopsis lyrata) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5045 | 26 | 51 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G01600.1 | 0.0 | NAC domain containing protein 44 |