PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WOX

Protein Properties

Length: 267aa MW: 29201.2 Da PI: 6.5682

Description

WOX family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676731238	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	49.5	7.3e-16	31	91	2	57
T--SS--HHHHHHHHHHHHH.SSS--HHHHHHHHHHC....TS-HHHHHHHHHHHHHHHHC CS Homeobox 2 rkRttftkeqleeLeelFek.nrypsaeereeLAkkl....gLterqVkvWFqNrRakekk 57 r+R+++++eq+ +Le+ F++ +p +ee ++ k l + +++V++WFqNrR + ++ 676731238 31 RSRWSPKPEQILILESIFNSgMVNPPKEETVRIRKMLekfgAVGDANVFYWFQNRRSRSRR 91 89***************99***********************************997 PP
2	Wus_type_Homeobox	107.5	7.9e-35	30	93	2	65
Wus_type_Homeobox 2 artRWtPtpeQikiLeelyksGlrtPnkeeiqritaeLeeyGkiedkNVfyWFQNrkaRerqkq 65 +r+RW+P+peQi iLe++++sG+++P+kee+ ri+++Le++G+++d+NVfyWFQNr++R+r++q 676731238 30 VRSRWSPKPEQILILESIFNSGMVNPPKEETVRIRKMLEKFGAVGDANVFYWFQNRRSRSRRRQ 93 589***********************************************************97 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.8E-14	25	99	IPR009057	Homeodomain-like
PROSITE profile	PS50071	11.531	27	92	IPR001356	Homeobox domain
SMART	SM00389	1.1E-6	29	96	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	6.7E-9	30	98	IPR009057	Homeodomain-like
Pfam	PF00046	1.3E-13	31	91	IPR001356	Homeobox domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0009734	Biological Process	auxin-activated signaling pathway
GO:0048830	Biological Process	adventitious root development
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 267 aa Download sequence Send to blast
MDQEQTPHSS TGHSHSPSSS ATGSSSTEPV RSRWSPKPEQ ILILESIFNS GMVNPPKEET 60 VRIRKMLEKF GAVGDANVFY WFQNRRSRSR RRQRQLQAAA VAAAATTNTC DQTMMVSNSL 120 PQHSGSDLGF GGCSTSSNYL FASSSSYGGG CDNHNNSGME NLLTMSGQMN YHEANQHHYL 180 HHSSNVESIL CPSDQSSNYH YQQGSITVFI NGVPTEVTSG GIDMKATFGE DLVLVNSSGV 240 PLPTDEFGFL MHSLQHGEAY FLVPRQT

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor which may be involved in developmental processes. {ECO:0000250}.

Binding Motif ? help Back to Top
Motif ID	Method	Source	Motif file
MP00330	DAP	Transfer from AT3G03660	Download

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676731238

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	Retrieve

Annotation -- Nucleotide ? help Back to Top
Source	Hit ID	E-value	Description
GenBank	AY251402	0.0	AY251402.1 Arabidopsis thaliana WOX11 protein mRNA, complete cds.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	NP_187016.2	1e-159	WUSCHEL related homeobox 11
Swissprot	Q6X7J3	1e-160	WOX11_ARATH; WUSCHEL-related homeobox 11
TrEMBL	A0A178V783	1e-154	A0A178V783_ARATH; WOX11
STRING	AT3G03660.2	1e-154	(Arabidopsis thaliana)
STRING	A0A087H6P3	1e-154	(Arabis alpina)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM2819	27	68

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G03660.1	1e-139	WUSCHEL related homeobox 11

Publications ? help Back to Top
Hu X,Xu L Transcription Factors WOX11/12 Directly Activate WOX5/7 to Promote Root Primordia Initiation and Organogenesis. Plant Physiol., 2016. 172(4): p. 2363-2373 [PMID:27784768] Sheng L, et al. Non-canonical WOX11-mediated root branching contributes to plasticity in Arabidopsis root system architecture. Development, 2017. 144(17): p. 3126-3133 [PMID:28743799] Liu J, et al. The WOX11-LBD16 Pathway Promotes Pluripotency Acquisition in Callus Cells During De Novo Shoot Regeneration in Tissue Culture. Plant Cell Physiol., 2018. 59(4): p. 734-743 [PMID:29361138] Baesso B, et al. Transcription factors PRE3 and WOX11 are involved in the formation of new lateral roots from secondary growth taproot in A. thaliana. Plant Biol (Stuttg), 2018. 20(3): p. 426-432 [PMID:29450949]