PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676731104
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family HSF
Protein Properties Length: 474aa    MW: 52424.1 Da    PI: 5.5482
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676731104genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1162.4e-36271182102
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d++++e++sws+ +nsfvv++  efak+ LpkyFkh+nf+SFvRQLn+YgF+kv+ ++         weF+++ F +g+k+ll++i 
     676731104  27 FLSKTYDMVDDPSTNEVVSWSSGNNSFVVWNVPEFAKHFLPKYFKHNNFSSFVRQLNTYGFRKVDPDR---------WEFANEGFLRGQKQLLKSIV 114
                   9****************************************************************999.........******************** PP

                   XXXX CS
  HSF_DNA-bind  99 rkks 102
                   r+k 
     676731104 115 RRKP 118
                   *986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.106.0E-3917111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004156.9E-5923116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467857.07E-3523116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.3E-192750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004472.7E-3127116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-196577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.3E-197890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 474 aa     Download sequence    Send to blast
MRSMCESVPT ANSSSASTTT VSSIPPFLSK TYDMVDDPST NEVVSWSSGN NSFVVWNVPE  60
FAKHFLPKYF KHNNFSSFVR QLNTYGFRKV DPDRWEFANE GFLRGQKQLL KSIVRRKPAQ  120
VQPPQQPQVQ HSSVGACVEV GKFGLEEEVE RLQRDKNVLM QELVRLRQQQ QVTEHHLQNV  180
GQKVHVMEQR QQQMMSFLAK AVQSPGFLNQ FAQQNNEGNQ HISESNKKRR LPVEDQRNNG  240
SHGVNGLSRQ IVRYQSSMNE SANNMLQQIQ TMSNSHSRHD SLSNNHGSFL LGDVPTSNLS  300
DNGSSSNGAS GVGFADVSSN PAHSYPATKH HDPCTTNQVL ETSLPYPQSD LLAPKQGAAA  360
ASGSPNSDVI GCETDNGECL DPIMAVLDGS MILETDGAIN ELVPGVQDSL WEQFFGESPG  420
IGDSDELVSG SVDNELILEQ LELQSNLRNV LSNNQQMNHL TEQMGLLTSD ALRK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-262211624129Heat shock factor protein 1
5d5v_B2e-262211624129Heat shock factor protein 1
5d5v_D2e-262211624129Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00328DAPTransfer from AT3G02990Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676731104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408356.10.0heat stress transcription factor A-1e
SwissprotQ9SCW50.0HFA1E_ARATH; Heat stress transcription factor A-1e
TrEMBLV4M1170.0V4M117_EUTSA; Uncharacterized protein
STRINGXP_006408356.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM22362371
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02990.10.0heat shock transcription factor A1E
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]