PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676729804

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

HD-ZIP

Protein Properties

Length: 423aa MW: 47767 Da PI: 6.7447

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676729804	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	17.9	5.3e-06	2	27	31	56
HHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 31 eeLAkklgLterqVkvWFqNrRakek 56 +eL+++lgL+ +k+WFq +R++ k 676729804 2 KELSRQLGLDHLPIKFWFQYKRTQNK 27 79*********************998 PP
2	START	144.5	9.8e-46	164	401	1	205
HHHHHHHHHHHHHHHHC-TT-EEEE....EXCCTTEEEEEEESSS......SCEEEEEEEECCSCHHHHHHHHHCCCGGCT-TT-S....EEEEEEEECT CS START 1 elaeeaaqelvkkalaeepgWvkss....esengdevlqkfeeskv.....dsgealrasgvvdmvlallveellddkeqWdetla....kaetleviss 87 ela +a+ el+++ +++ep+W+k + + de++++f+ + + +++ea++++++v+m++ + v l+d++ W+ ++a +a t++++ s 676729804 164 ELAVAAMGELMALTQVSEPLWKKRVngktLALSLDEYTRTFQNGLGsrpvgFRTEASKETAIVFMNHLDIVHMLMDVN-LWSVMFAgmvaRAITHDTVLS 262 57899******************77666677899999996655599**************************.***88888888888888 PP T......EEEEEEEEXXTTXX-SSX.EEEEEEEEEEE.TTS-EEEEEEEEE-TTS--.-TTSEE-EESSEEEEEEEECTCE.................EE CS START 88 g......galqlmvaelqalsplvp.RdfvfvRyirqlgagdwvivdvSvdseqkppesssvvRaellpSgiliepksngh.................sk 163 g g+ +lm+ e+q+lspl + R+ +fvRy++q+ +g+w++vd+Svd+ ++ e +++++pSg+lie++++g + 676729804 263 GvdgnlnGTFHLMNVEYQVLSPLMStRECYFVRYCKQHDEGSWAVVDISVDHLVPNLE----LKCRRRPSGCLIEQLPDGSsrfcvgifklkclyfvcLR 358 8***************************************************98....99999*************************9448 PP EEEEE-EE--SSXX.HHHHHHHHHHHHHHHHHHHHHHTXXXXX CS START 164 vtwvehvdlkgrlp.hwllrslvksglaegaktwvatlqrqce 205 +twvehv++++r + h l+++l++sg+a gak+wvatl+ q e 676729804 359 ITWVEHVEVDDRGVvHDLFKHLLNSGQAVGAKRWVATLEGQSE 401 *******9888*********************98877 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50071	9.378	1	29	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	2.4E-4	2	32	IPR009057	Homeodomain-like
PROSITE profile	PS50848	32.714	155	405	IPR002913	START domain
SuperFamily	SSF55961	1.65E-26	158	403	No hit	No description
CDD	cd08875	9.10E-96	159	401	No hit	No description
SMART	SM00234	1.5E-39	164	402	IPR002913	START domain
Pfam	PF01852	1.2E-38	165	401	IPR002913	START domain
Gene3D	G3DSA:3.30.530.20	9.8E-5	268	366	IPR023393	START-like domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0008289	Molecular Function	lipid binding

Sequence ? help Back to Top
Protein Sequence Length: 423 aa Download sequence Send to blast
MKELSRQLGL DHLPIKFWFQ YKRTQNKNHQ ERIENLQLRE ENNRLRADIQ RFRDALANAF 60 CPKCGGHTAV GEMSLEEHHL RIENAALSEE ERTIYMRALE NEYIRQLSVM AAKYTGQAVM 120 SYPLMSPPNQ APPFEPAMVT NGSIGNLSGE NVGVQDSDKL LVIELAVAAM GELMALTQVS 180 EPLWKKRVNG KTLALSLDEY TRTFQNGLGS RPVGFRTEAS KETAIVFMNH LDIVHMLMDV 240 NLWSVMFAGM VARAITHDTV LSGVDGNLNG TFHLMNVEYQ VLSPLMSTRE CYFVRYCKQH 300 DEGSWAVVDI SVDHLVPNLE LKCRRRPSGC LIEQLPDGSS RFCVGIFKLK CLYFVCLRIT 360 WVEHVEVDDR GVVHDLFKHL LNSGQAVGAK RWVATLEGQS ERLAMITVTN IPSLEPGGLL 420 SIY

Sequence ? help Back to Top

Protein Sequence Length: 423 aa Download sequence Send to blast

MKELSRQLGL DHLPIKFWFQ YKRTQNKNHQ ERIENLQLRE ENNRLRADIQ RFRDALANAF  60
CPKCGGHTAV GEMSLEEHHL RIENAALSEE ERTIYMRALE NEYIRQLSVM AAKYTGQAVM  120
SYPLMSPPNQ APPFEPAMVT NGSIGNLSGE NVGVQDSDKL LVIELAVAAM GELMALTQVS  180
EPLWKKRVNG KTLALSLDEY TRTFQNGLGS RPVGFRTEAS KETAIVFMNH LDIVHMLMDV  240
NLWSVMFAGM VARAITHDTV LSGVDGNLNG TFHLMNVEYQ VLSPLMSTRE CYFVRYCKQH  300
DEGSWAVVDI SVDHLVPNLE LKCRRRPSGC LIEQLPDGSS RFCVGIFKLK CLYFVCLRIT  360
WVEHVEVDDR GVVHDLFKHL LNSGQAVGAK RWVATLEGQS ERLAMITVTN IPSLEPGGLL  420
SIY

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor. {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676729804

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_013634261.1	0.0	PREDICTED: homeobox-leucine zipper protein HDG2
Refseq	XP_013741430.1	0.0	homeobox-leucine zipper protein HDG3-like
Swissprot	Q9ZV65	1e-143	HDG3_ARATH; Homeobox-leucine zipper protein HDG3
TrEMBL	A0A3N6Q9I3	0.0	A0A3N6Q9I3_BRACR; Uncharacterized protein
STRING	Bo4g045920.1	0.0	(Brassica oleracea)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G32370.1	1e-145	homeodomain GLABROUS 3

Publications ? help Back to Top
Burkart-Waco D,Ngo K,Lieberman M,Comai L Perturbation of parentally biased gene expression during interspecific hybridization. PLoS ONE, 2015. 10(2): p. e0117293 [PMID:25719202]