PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

676729786

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 291aa MW: 33247.4 Da PI: 4.6016

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676729786	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	105.3	4.9e-33	107	200	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsk.sqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fqrlwseeD++v+LqG+++fk++tgk s+d+d+fye vk+si f+ ++ + lv+Kir L+kK+ +k+kk g psf k+ d+++fels++iWg 676729786 107 YFQRLWSEEDDLVILQGMLKFKNETGKTHSEDMDGFYESVKDSITFEGKNlNRLVNKIRTLRKKYMTKRKK---GVAPSFLKSLDKQCFELSESIWG 200 89******************************************9765489************99...********************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	3.2E-27	108	200	IPR007592	Protein of unknown function DUF573

Sequence ? help Back to Top
Protein Sequence Length: 291 aa Download sequence Send to blast
MANKLHEPLQ DPPAASLSEE ESSEEASSSE DKEEEEAKTP VQTSPGEPES DNESESKTAV 60 SPLVSVALMK NTKRQRTEET TTSVSEIQVK MENDEEEIGT ETTKNSYFQR LWSEEDDLVI 120 LQGMLKFKNE TGKTHSEDMD GFYESVKDSI TFEGKNLNRL VNKIRTLRKK YMTKRKKGVA 180 PSFLKSLDKQ CFELSESIWG FEVESKMKKV KLESSETEGE IVETDWIMNS FIGESFSSFG 240 MKDEDVKKKW SLLPAETQRK VYVKWKVFEE KSAEVMVQKI GLLREVAYLL A

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676729786

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM313	28	181

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G66420.1	1e-40	DNA-binding storekeeper protein-related transcriptional regulator