PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729652
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 323aa    MW: 35658.3 Da    PI: 9.847
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729652genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding44.73e-14108153247
                      SSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   2 grWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      ++WT+eE+ +++ + k+lG+g+W+ Ia+   ++Rt+ q+ s+ qky
        676729652 108 KPWTEEEHRIFLVGLKKLGKGDWRGIAKSYVTTRTPTQVASHAQKY 153
                      58*******************************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501588.6141225IPR001878Zinc finger, CCHC-type
PROSITE profilePS5129417.517102158IPR017930Myb domain
SuperFamilySSF466891.59E-16104158IPR009057Homeodomain-like
TIGRFAMsTIGR015575.7E-16105156IPR006447Myb domain, plants
SMARTSM007173.0E-11106156IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.9E-11106152IPR009057Homeodomain-like
PfamPF002494.5E-12108153IPR001005SANT/Myb domain
CDDcd001672.53E-10109153No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 323 aa     Download sequence    Send to blast
MVKEIVATGK TCSHCGHNGH NARTCLNGVN KGSVKLFGVN ISSDPIRPPE VTALRKSLSL  60
GNLDALLANN NSSGNGDPIA AVEDTGYHSD GQIHSKTGRS VNDKKKGKPW TEEEHRIFLV  120
GLKKLGKGDW RGIAKSYVTT RTPTQVASHA QKYYLRLNAN DKRRRRASLF DISLEDQKEK  180
EKKSQVVTID ASTSSSNIPS KQPITGSQEP VQVQTQTEIA NRFQNLSMEY MPIYRTVPPY  240
YNFPSVMFHP MYYPNPEQIR YVHPSGIPVP RHLPIGMPQP QANEASRITD KDGLELDIGL  300
RPPPPPQSTG ATDLPAHGVI HVN
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor involved in somatic embryogenesis. Acts as positive regulator of BHLH109. {ECO:0000269|PubMed:26973252}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00573DAPTransfer from AT5G61620Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729652
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006394486.10.0probable transcription factor At5g61620
SwissprotQ9FKF90.0M5162_ARATH; Probable transcription factor At5g61620
TrEMBLV4KP910.0V4KP91_EUTSA; Uncharacterized protein
STRINGXP_006394486.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM60212747
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G61620.11e-168MYB_related family protein
Publications ? help Back to Top
  1. Nowak K,Gaj MD
    Stress-related function of bHLH109 in somatic embryo induction in Arabidopsis.
    J. Plant Physiol., 2016. 193: p. 119-26
    [PMID:26973252]