PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676729212
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family WRKY
Protein Properties Length: 361aa    MW: 40739 Da    PI: 10.385
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676729212genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY98.25.4e-31295353360
                -SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhek 60 
                D y+WrKYGqK++kgs++pr+YY+C+s  gCp++k+ver+ edp ++++tYe eHnh+k
  676729212 295 DDYSWRKYGQKPIKGSPYPRGYYKCSSMrGCPARKHVERCLEDPAMLIVTYEAEHNHPK 353
                99***********************9988****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF105332.8E-17245291IPR018872Zn-cluster domain
Gene3DG3DSA:2.20.25.803.6E-33281353IPR003657WRKY domain
PROSITE profilePS5081130.366288354IPR003657WRKY domain
SuperFamilySSF1182901.27E-26291353IPR003657WRKY domain
SMARTSM007742.0E-37293353IPR003657WRKY domain
PfamPF031061.9E-26295352IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 361 aa     Download sequence    Send to blast
MEEIEGTNRA AVESCHRVLN LLSRPHQQDH GYDKSLVSET REAVFRFKRV GSLLSSSVGH  60
ARFRRAKKPQ THLSQSVFLE PGHQRTEPPS SQKAPVLRSG FHELSLRPTD SLTLGTRSFS  120
LNSNVKPPLL QLNQQAMPSS NYPNKFPEHQ QQQQQQLHER LQAHHHLQQQ QQQQQKHQAE  180
IMLRKCNGGI SLSFDNSSCT PTMSSTRSFV SSLSIDGSVA NIEGKNSFHL VGVPSSTDQS  240
SQHSKRKCLM KGDEHGSIKC GSSSRCHCSK KRKHRVRRSI RVPAISNKVA DIPPDDYSWR  300
KYGQKPIKGS PYPRGYYKCS SMRGCPARKH VERCLEDPAM LIVTYEAEHN HPKLPSQTVT  360
T
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A2e-20281356276WRKY transcription factor 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00284DAPTransfer from AT2G30590Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676729212
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530390.0AK353039.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-13-E12.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006410164.10.0probable WRKY transcription factor 21
SwissprotO043360.0WRK21_ARATH; Probable WRKY transcription factor 21
TrEMBLV4M9740.0V4M974_EUTSA; Uncharacterized protein
STRINGXP_006410164.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM35672861
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G30590.10.0WRKY DNA-binding protein 21