 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676728556 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
C3H |
| Protein Properties |
Length: 346aa MW: 39190.6 Da PI: 7.9487 |
| Description |
C3H family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676728556 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | zf-CCCH | 22.2 | 2.5e-07 | 34 | 54 | 5 | 26 |
--SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 5 lCrffartGtCkyGdrCkFaHg 26
C f+++ G+C yG+rC++ H+
676728556 34 VCTFYQK-GICLYGSRCRYEHV 54
5******.***********997 PP
|
| 2 | zf-CCCH | 20.7 | 7.5e-07 | 110 | 132 | 3 | 26 |
S---SGGGGTS--TTTTT-SS-SS CS
zf-CCCH 3 telCrffartGtCkyGdrCkFaHg 26
+++C+ fa+ G C++G++C+ +Hg
676728556 110 YPICS-FAAAGDCPRGNQCPHMHG 132
78999.**************9998 PP
|
| Protein Features
? help Back to Top |
 |
| Database |
Entry ID |
E-value |
Start |
End |
InterPro ID |
Description |
| PROSITE profile | PS50103 | 14.784 | 1 | 28 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 1.8E-4 | 2 | 27 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 2.35E-7 | 4 | 26 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 13.911 | 29 | 56 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF90229 | 4.06E-5 | 31 | 53 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 5.2E-4 | 31 | 55 | IPR000571 | Zinc finger, CCCH-type |
| Pfam | PF00642 | 2.9E-4 | 34 | 54 | IPR000571 | Zinc finger, CCCH-type |
| Gene3D | G3DSA:4.10.1000.10 | 0.001 | 34 | 53 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.028 | 107 | 133 | IPR000571 | Zinc finger, CCCH-type |
| PROSITE profile | PS50103 | 12.014 | 107 | 134 | IPR000571 | Zinc finger, CCCH-type |
| SuperFamily | SSF57850 | 3.83E-13 | 164 | 240 | No hit | No description |
| Gene3D | G3DSA:3.30.40.10 | 2.9E-10 | 168 | 235 | IPR013083 | Zinc finger, RING/FYVE/PHD-type |
| CDD | cd00162 | 8.20E-4 | 175 | 235 | No hit | No description |
| Pfam | PF00097 | 5.0E-8 | 176 | 233 | IPR018957 | Zinc finger, C3HC4 RING-type |
| PROSITE profile | PS50089 | 12.401 | 176 | 234 | IPR001841 | Zinc finger, RING-type |
| SMART | SM00184 | 1.9E-7 | 176 | 233 | IPR001841 | Zinc finger, RING-type |
| PROSITE pattern | PS00518 | 0 | 200 | 209 | IPR017907 | Zinc finger, RING-type, conserved site |
| PROSITE profile | PS50103 | 13.967 | 263 | 292 | IPR000571 | Zinc finger, CCCH-type |
| SMART | SM00356 | 0.63 | 263 | 291 | IPR000571 | Zinc finger, CCCH-type |
| Sequence ? help Back to Top |
| Protein Sequence Length: 346 aa
Download sequence Send
to blast |
MSDRILCKFF VHGSCLKGEN CEYSHDSKDP ANNVCTFYQK GICLYGSRCR YEHVRTSQPQ 60
SLSASNVPRP PFCSDSHPQS LSTAYSSLLT QQKGDGEKSH NVYYIHPREY PICSFAAAGD 120
CPRGNQCPHM HGDICTTCGK KCLHPFRPEE REEHTKECEK KQKHIEALKK SQDIECSVCL 180
DRVLSKATPG ERKFGLLTEC DHPFCIQCIR NWRSSAPVSG MDVNSTLRAC PICRKLSYFV 240
VPSVVWYATP EEKKDIIDIY KAKLSSIDCK HFNFGNGNCP FGGSCFYKHA YPDGHLEEVV 300
LRHLGSQEGE NAIRVPWSPA DLKYPFLYNR MTMKSMINQP IGLVHD
|
| Functional Description ? help
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| Source |
Description |
| UniProt | E3 ubiquitin ligase catalyzing the covalent attachment of ubiquitin moieties onto substrate proteins. {ECO:0000250}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AY070366 | 0.0 | AY070366.1 Arabidopsis thaliana unknown protein (At3g08505) mRNA, complete cds. |
| GenBank | BT000988 | 0.0 | BT000988.1 Arabidopsis thaliana clone U18319 unknown protein (At3g08505) mRNA, complete cds. |
