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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676728416 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 93aa MW: 10566.1 Da PI: 9.1544 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 51.1 | 4e-16 | 24 | 77 | 47 | 100 |
DUF260 47 kalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 k+lp++er++a++sl++eA++r++dP+yG+vg+i+ lq+q++++++ la++++e 676728416 24 KQLPQHERSEAAESLYFEAQCRIEDPIYGCVGIISLLQSQIQKAQNLLAKTNAE 77 6899******************************************99998876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 9.353 | 1 | 78 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 4.9E-14 | 24 | 75 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 93 aa Download sequence Send to blast |
MAHTRIYKNL KTSMKDFGSF SKKKQLPQHE RSEAAESLYF EAQCRIEDPI YGCVGIISLL 60 QSQIQKAQNL LAKTNAEIAL VQTTLPNSNF YLN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676728416 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_010425379.1 | 1e-24 | PREDICTED: LOB domain-containing protein 24-like | ||||
Refseq | XP_019085406.1 | 5e-25 | PREDICTED: LOB domain-containing protein 24-like | ||||
Swissprot | P59468 | 3e-25 | LBD24_ARATH; LOB domain-containing protein 24 | ||||
TrEMBL | A0A0D3BB79 | 4e-23 | A0A0D3BB79_BRAOL; Uncharacterized protein | ||||
TrEMBL | A0A3P6BC36 | 4e-23 | A0A3P6BC36_BRAOL; Uncharacterized protein | ||||
STRING | Bostr.0556s0333.1.p | 1e-24 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G26660.1 | 1e-27 | LOB domain-containing protein 24 |