PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676727974 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 163aa MW: 17934.6 Da PI: 7.0965 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 127.3 | 6.9e-40 | 11 | 110 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+l+r+C++ C++apyf +++p +fa vhk+FGasnv+kll+++pee+r+++++sl+yeA++r++dPvyG++g i +lq+++ +l++++a+++++ 676727974 11 SCAACKLLKRRCTPTCIFAPYFRSSDPITFAKVHKVFGASNVSKLLNEVPEEQRQETVNSLAYEADVRLKDPVYGCIGAIASLQKKMLELQHDIAVARNR 110 6**********************************************************************************************99876 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 24.944 | 10 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 6.6E-39 | 11 | 108 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 163 aa Download sequence Send to blast |
MRGHEPRSSS SCAACKLLKR RCTPTCIFAP YFRSSDPITF AKVHKVFGAS NVSKLLNEVP 60 EEQRQETVNS LAYEADVRLK DPVYGCIGAI ASLQKKMLEL QHDIAVARNR LLAHAGVNNH 120 VSPLDNSPEL AAFLDLIPYS DLMLLDGSGL DAHLYDLGQP PFV |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 9e-43 | 6 | 115 | 6 | 115 | LOB family transfactor Ramosa2.1 |
5ly0_B | 9e-43 | 6 | 115 | 6 | 115 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676727974 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AC254608 | 0.0 | AC254608.1 Capsella rubella clone CAP16-D12, complete sequence. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_023641520.1 | 1e-111 | LOB domain-containing protein 21 | ||||
Swissprot | Q9SRL8 | 1e-108 | LBD21_ARATH; LOB domain-containing protein 21 | ||||
TrEMBL | R0HVY9 | 1e-109 | R0HVY9_9BRAS; Uncharacterized protein | ||||
STRING | Bostr.19424s1045.1.p | 1e-111 | (Boechera stricta) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM10255 | 27 | 35 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G11090.1 | 1e-100 | LOB domain-containing protein 21 |
Publications ? help Back to Top | |||
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