PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676727126
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 279aa    MW: 30559.8 Da    PI: 8.8167
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676727126genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding21.45.8e-073431247
                     HHHHHHHTTTT-HHHHHHHHT.....TTS-HHHHHHHHHHH CS
  Myb_DNA-binding 12 lvdavkqlGggtWktIartmg.....kgRtlkqcksrwqky 47
                     l+ +v+++G+g Wk I r         +R+  ++k++w+++
        676727126  3 LLAGVEKHGPGKWKNILRDPEfadqlSNRSNIDLKDKWRNL 43
                     899***********************9************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129410.966148IPR017930Myb domain
CDDcd116607.59E-16143No hitNo description
SuperFamilySSF466892.08E-10250IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.5E-9243IPR009057Homeodomain-like
SMARTSM005266.6E-16111177IPR005818Linker histone H1/H5, domain H15
Gene3DG3DSA:1.10.10.106.4E-10112176IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467853.32E-13112186IPR011991Winged helix-turn-helix DNA-binding domain
PROSITE profilePS5150420.28113182IPR005818Linker histone H1/H5, domain H15
PfamPF005381.3E-8115174IPR005818Linker histone H1/H5, domain H15
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006334Biological Processnucleosome assembly
GO:0009651Biological Processresponse to salt stress
GO:0009723Biological Processresponse to ethylene
GO:0009733Biological Processresponse to auxin
GO:0009751Biological Processresponse to salicylic acid
GO:0009753Biological Processresponse to jasmonic acid
GO:0046686Biological Processresponse to cadmium ion
GO:0000786Cellular Componentnucleosome
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 279 aa     Download sequence    Send to blast
MALLAGVEKH GPGKWKNILR DPEFADQLSN RSNIDLKDKW RNLSVPTDIQ GSKDKVRTPK  60
IKAAAFHLAT VAAAATSAPT PSSISSPVAP LARSGSSDLS IDDSCNITVD AKNAPRYDGM  120
IFEALSALTD ANGSDVSTIF NVIEQKKHEV PPNFKRVLGS RLRRLAAQGK LEKSQNFYKM  180
NDNSFLAMRT PLVARPKEVS VKPRQTNSQG PTVSQEKIAH ASGTAAFKLY EVDNKLEVVS  240
GVVEDRDKMI ELAERAEIIL LLAEELHERC CRGEIVELN
Functional Description ? help Back to Top
Source Description
UniProtBinds preferentially double-stranded telomeric repeats. {ECO:0000250}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00652PBMTransfer from LOC_Os01g51154Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676727126
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018445003.11e-147PREDICTED: telomere repeat-binding factor 4 isoform X2
SwissprotF4I7L11e-119TRB4_ARATH; Telomere repeat-binding factor 4
TrEMBLA0A397YWR11e-144A0A397YWR1_BRACM; Uncharacterized protein
STRINGXP_006416694.11e-143(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM23212875
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G17520.11e-106MYB_related family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  2. Kotliński M, et al.
    Phylogeny-Based Systematization of Arabidopsis Proteins with Histone H1 Globular Domain.
    Plant Physiol., 2017. 174(1): p. 27-34
    [PMID:28298478]