PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676726924
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 132aa    MW: 15354.1 Da    PI: 4.3948
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676726924genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B353.64.2e-1716100999
                HHHHTT-EE--HHH.HTT.---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3   9 dvlksgrlvlpkkfaeeh.ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99 
                ++ +s  l +p +f  e+ +   + + t+ l d  grsW++++  ++++++++l+ GW++Fvk+n+L++g ++ F +  +++f  +v +f +
  676726924  16 SHKSSESLAIPLHFN-EYlQD--PLPNTVELLDYCGRSWTIRM--KRRRETVFLALGWENFVKDNELEDGKMMNFIYGCNRSF--HVIIFGH 100
                44566779******8.67243..4899****************..*******************************9988888..9888875 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.103.0E-205103IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086314.1288101IPR003340B3 DNA binding domain
SuperFamilySSF1019364.71E-219103IPR015300DNA-binding pseudobarrel domain
SMARTSM010192.8E-1410101IPR003340B3 DNA binding domain
PfamPF023621.7E-141698IPR003340B3 DNA binding domain
CDDcd100171.25E-141998No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 132 aa     Download sequence    Send to blast
MADTNEDQSF LIPFISHKSS ESLAIPLHFN EYLQDPLPNT VELLDYCGRS WTIRMKRRRE  60
TVFLALGWEN FVKDNELEDG KMMNFIYGCN RSFHVIIFGH SGCSEFRDFP QAFVDVADYA  120
TGEEEEEKNN SN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1yel_A3e-4511033104At1g16640
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676726924
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009149100.12e-67PREDICTED: B3 domain-containing protein At1g16640
SwissprotQ9FX774e-52Y1664_ARATH; B3 domain-containing protein At1g16640
TrEMBLA0A397YYT14e-66A0A397YYT1_BRACM; Uncharacterized protein
STRINGBo5g022070.12e-65(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM157511416
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G16640.11e-54B3 family protein
Publications ? help Back to Top
  1. Mantegazza O, et al.
    Analysis of the arabidopsis REM gene family predicts functions during flower development.
    Ann. Bot., 2014. 114(7): p. 1507-15
    [PMID:25002525]