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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676726910 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 164aa MW: 18084.9 Da PI: 8.601 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 142 | 1.9e-44 | 14 | 113 | 1 | 100 |
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkalpeeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallkee 100 +CaaCk+lrrkC+kdCv+apyfpa++p+kfa+vhk+FGasnv k+l+ l+e++r+da++s+vyeA+ar++dPvyG+vg+i++lq++le+l+++la +++e 676726910 14 PCAACKLLRRKCVKDCVFAPYFPAKEPHKFAIVHKIFGASNVNKMLQVLSENQRSDAVNSMVYEANARVQDPVYGCVGTISSLQRHLETLQTQLAFAQAE 113 7**********************************************************************************************99987 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE profile | PS50891 | 26.738 | 13 | 114 | IPR004883 | Lateral organ boundaries, LOB |
Pfam | PF03195 | 2.1E-43 | 14 | 111 | IPR004883 | Lateral organ boundaries, LOB |
Sequence ? help Back to Top |
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Protein Sequence Length: 164 aa Download sequence Send to blast |
MRRKGDKHGG AVSPCAACKL LRRKCVKDCV FAPYFPAKEP HKFAIVHKIF GASNVNKMLQ 60 VLSENQRSDA VNSMVYEANA RVQDPVYGCV GTISSLQRHL ETLQTQLAFA QAELVHMKTL 120 HPVDTKPPPY MASGITLPVN KDFSCDVDMA FVFENGAGES LWSS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5ly0_A | 4e-45 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
5ly0_B | 4e-45 | 10 | 115 | 7 | 112 | LOB family transfactor Ramosa2.1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676726910 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By cytokinin. {ECO:0000269|PubMed:17485849}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_009149087.1 | 1e-105 | PREDICTED: LOB domain-containing protein 3 | ||||
Refseq | XP_013641646.1 | 1e-105 | LOB domain-containing protein 3 | ||||
Swissprot | Q9SA51 | 2e-94 | LBD3_ARATH; LOB domain-containing protein 3 | ||||
TrEMBL | A0A078JJD7 | 1e-104 | A0A078JJD7_BRANA; BnaA06g38340D protein | ||||
TrEMBL | A0A291LQZ1 | 1e-104 | A0A291LQZ1_BRARR; Transcription factor LBD3 | ||||
TrEMBL | A0A397Z3B7 | 1e-104 | A0A397Z3B7_BRACM; Uncharacterized protein | ||||
TrEMBL | M4EB83 | 1e-104 | M4EB83_BRARP; Uncharacterized protein | ||||
STRING | Bra026042.1-P | 1e-105 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM131 | 28 | 340 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G16530.1 | 8e-97 | ASYMMETRIC LEAVES 2-like 9 |
Publications ? help Back to Top | |||
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