PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676725950 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | MYB_related | ||||||||
Protein Properties | Length: 312aa MW: 34508.2 Da PI: 5.9163 | ||||||||
Description | MYB_related family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | Myb_DNA-binding | 33.1 | 1.3e-10 | 68 | 107 | 3 | 44 |
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrw 44 ++T+eE++l+++ ++ +G++ W +Ia++++ g+t++++k w 676725950 68 SFTPEEEDLIIKMHAAMGSR-WPLIAQHLP-GKTEEEVKMIW 107 79******************.*********.*******9655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF46689 | 1.38E-12 | 48 | 119 | IPR009057 | Homeodomain-like |
PROSITE profile | PS51294 | 15.12 | 61 | 115 | IPR017930 | Myb domain |
Gene3D | G3DSA:1.10.10.60 | 4.5E-16 | 64 | 115 | IPR009057 | Homeodomain-like |
SMART | SM00717 | 1.4E-10 | 65 | 113 | IPR001005 | SANT/Myb domain |
CDD | cd00167 | 1.39E-8 | 68 | 111 | No hit | No description |
Pfam | PF00249 | 1.0E-9 | 68 | 108 | IPR001005 | SANT/Myb domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 312 aa Download sequence Send to blast |
MVRSCSSKSK NPWTEEENAP QKFAFASASA SASASKNGSA TPKQIGLRRC GKSCRVRKTD 60 ISGTKHESFT PEEEDLIIKM HAAMGSRWPL IAQHLPGKTE EEVKMIWNSK LKKKLSQMGI 120 DHVTHRPFSH VLAEYGNING GGTVNPNPLN QAGSLGRNHS LNEDPHQQQP DDSGDLMFHL 180 QAIKLMTESS NQVKPESTFM YASSSSSNSS PPLFSSTCST IAQENSEVNF TWSDFLLDQE 240 AFHENQQNHP DQELDNLFGN EFSEVAATTM ANTSTQNSQV DSSSNGFVES IMAKEKELFL 300 GYPSYLEPPF HF |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00148 | DAP | Transfer from AT1G18960 | Download |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676725950 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AB493466 | 0.0 | AB493466.1 Arabidopsis thaliana At1g18960 mRNA for hypothetical protein, partial cds, clone: RAAt1g18960. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006416547.1 | 0.0 | transcription factor MYB35 | ||||
TrEMBL | V4KB20 | 0.0 | V4KB20_EUTSA; Uncharacterized protein | ||||
STRING | XP_006416547.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14822 | 15 | 18 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G18960.1 | 1e-167 | MYB_related family protein |