PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676725640 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C2H2 | ||||||||
Protein Properties | Length: 168aa MW: 19461.2 Da PI: 10.5929 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 14.3 | 0.00012 | 21 | 43 | 2 | 23 |
EETTTTEEESSHHHHHHHHHH.T CS zf-C2H2 2 kCpdCgksFsrksnLkrHirt.H 23 +C+ C++ F ++ +L++H +t H 676725640 21 ECSVCNRIFLTPQDLVSHSNTfH 43 6*****************99988 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
PROSITE pattern | PS00028 | 0 | 22 | 43 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 168 aa Download sequence Send to blast |
MNGGFGMKKN LKRVSHPQPQ ECSVCNRIFL TPQDLVSHSN TFHPRFPTFS SSATAPPTTF 60 RPYQNLNRNP YPVLPARNRF DVNYYRSGYI DEQGRFHKGF PATTPANRSN FLYRQQEMPK 120 LMNFFPAMSS ENFRTLPLLC QLEQRRPQEA FTEKGRAISS PIDLTLRL |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676725640 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006418127.1 | 8e-63 | uncharacterized protein LOC18994422 | ||||
TrEMBL | A0A0D3DIU1 | 1e-65 | A0A0D3DIU1_BRAOL; Uncharacterized protein | ||||
STRING | Bo8g002980.1 | 2e-66 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM13551 | 13 | 21 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G04445.1 | 5e-43 | C2H2-like zinc finger protein |