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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676725526 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | C2H2 | ||||||||
Protein Properties | Length: 172aa MW: 19045.9 Da PI: 10.3382 | ||||||||
Description | C2H2 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | zf-C2H2 | 13 | 0.00032 | 36 | 58 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 y+C+ C+k Fs+ +L H +H 676725526 36 YRCKTCTKEFSSFQSLGGHRASH 58 9*************999999888 PP | |||||||
2 | zf-C2H2 | 14.9 | 7.9e-05 | 88 | 110 | 1 | 23 |
EEETTTTEEESSHHHHHHHHHHT CS zf-C2H2 1 ykCpdCgksFsrksnLkrHirtH 23 ++Cp+Cg F+ L H+r+H 676725526 88 HRCPICGLEFPMGQALGGHMRKH 110 79********************9 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF57667 | 1.74E-9 | 34 | 110 | No hit | No description |
Pfam | PF13912 | 1.7E-10 | 35 | 60 | IPR007087 | Zinc finger, C2H2 |
PROSITE profile | PS50157 | 9.723 | 36 | 63 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.18 | 36 | 58 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 38 | 58 | IPR007087 | Zinc finger, C2H2 |
Gene3D | G3DSA:3.30.160.60 | 8.5E-4 | 86 | 113 | IPR013087 | Zinc finger C2H2-type/integrase DNA-binding domain |
PROSITE profile | PS50157 | 10.201 | 88 | 115 | IPR007087 | Zinc finger, C2H2 |
Pfam | PF13912 | 3.5E-11 | 88 | 111 | IPR007087 | Zinc finger, C2H2 |
SMART | SM00355 | 0.025 | 88 | 110 | IPR015880 | Zinc finger, C2H2-like |
PROSITE pattern | PS00028 | 0 | 90 | 110 | IPR007087 | Zinc finger, C2H2 |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0010200 | Biological Process | response to chitin | ||||
GO:0003676 | Molecular Function | nucleic acid binding | ||||
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 172 aa Download sequence Send to blast |
MVARREKLDR TVDDRAVKCL MLLSKVGGYG GESRVYRCKT CTKEFSSFQS LGGHRASHNK 60 PVNNSIDEQL SLSSGPVTKK KTKKTRPHRC PICGLEFPMG QALGGHMRKH RNEEDSSGAL 120 VTRSFFPEAT TTTTFTTLKK SSSGKRVACL DLGLDSMDSM INLKLELGRT IY |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Probable transcription factor that may be involved in stress responses. {ECO:0000250}. |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676725526 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By heat stress. {ECO:0000269|PubMed:18201973}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013651513.1 | 8e-81 | zinc finger protein ZAT8 | ||||
Swissprot | Q9LX85 | 7e-73 | ZAT8_ARATH; Zinc finger protein ZAT8 | ||||
TrEMBL | A0A3N6PW19 | 1e-79 | A0A3N6PW19_BRACR; Uncharacterized protein | ||||
STRING | Bo3g130310.1 | 7e-80 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM2028 | 18 | 76 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G46080.1 | 1e-67 | C2H2 family protein |