PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676725400
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family ERF
Protein Properties Length: 2352aa    MW: 267484 Da    PI: 6.6564
Description ERF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676725400genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP256.66.4e-1889139155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                ++++GVr+++ +g+W+AeIrdp   ++r r +lg+f taeeAa+ +++a+ +l+g
  676725400  89 KKFRGVRQRP-WGKWAAEIRDP---NRRVRRWLGTFNTAEEAARVYDHAAVQLHG 139
                59********.**********9...335999********************9998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000181.92E-2989149No hitNo description
SuperFamilySSF541712.03E-2090148IPR016177DNA-binding domain
SMARTSM003801.6E-3390153IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.108.1E-2890147IPR001471AP2/ERF domain
PROSITE profilePS5103223.59190147IPR001471AP2/ERF domain
PfamPF008474.8E-1090139IPR001471AP2/ERF domain
PRINTSPR003673.1E-891102IPR001471AP2/ERF domain
PRINTSPR003673.1E-8113129IPR001471AP2/ERF domain
PfamPF031082.6E-9504568IPR004332Transposase, MuDR, plant
PfamPF031082.7E-510661123IPR004332Transposase, MuDR, plant
PfamPF105512.7E-1112671355IPR018289MULE transposase domain
PROSITE profilePS509669.69314371480IPR007527Zinc finger, SWIM-type
PfamPF044341.8E-714451479IPR007527Zinc finger, SWIM-type
SMARTSM005754.3E-914551482IPR006564Zinc finger, PMZ-type
PfamPF031082.0E-1217511815IPR004332Transposase, MuDR, plant
PfamPF105517.3E-1619572054IPR018289MULE transposase domain
Gene3DG3DSA:1.10.10.601.5E-1222572317IPR009057Homeodomain-like
SuperFamilySSF1097157.59E-1022582315No hitNo description
PfamPF087669.4E-822622314IPR014876DEK, C-terminal
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 2352 aa     Download sequence    Send to blast
METGLISQTE HQRNIKRKAE TPRILRISVT DPYATDSSSS DDDENHNMTK KRRRVKKYVR  60
EITLETPSFA TEHQNDIVSK ERVKSNTKKK FRGVRQRPWG KWAAEIRDPN RRVRRWLGTF  120
NTAEEAARVY DHAAVQLHGL AAVTNFPAAF IQPETPCVAA SIQSPSTVLH SPVSSDSLSN  180
TPTGGEDCFA TVSERIFPPV DSVFIGDHFG LSEISVEDCF TVGFSSTFGF SNLHVEEDRS  240
YHDIVTVCLP LDHIAEEILN TTEISSLSEH PSFLAKTKTR ISIFFRFVVV MTELEVPVYC  300
YWNGCIKYGP EGVYYEGSTP KRIIVNPKVA LNRLLDEMYA LAGVNIDKQR SKVKIFGRYP  360
SVVGSTFQYL LLPVVNSNSL ETMLEVPSKH PSIKNVELYL EVKSDGVIDS AACSSVLANP  420
GSSLKRQRTE VAVKLERDNS NKVIEDAGNV GGGDGTDKTP GSDAVAQVIN LTGDSSKSHD  480
DLNRHSSSGV SKHCQSSLWL EEHDFRVGLC FKNVDELKKT VEWCSIKGLQ QCIVRETGTD  540
ECVFECVRWK CKWSLVAIRM EKHGLFEIIK YTGPHTCRSA NSYSEFLADE TERVVRVNPT  600
LSVLELRKWW KAKIGHELET SEVRDAKDEA IERVFGDWDQ SFEDLPKLMS AFSSSNGLLV  660
DWKYVQEAEN QPFALHFLLF RSYQLGRKLP EFRDCCLHHH LHLTYQGLDT RAWNILWILG  720
VKLGPYKYGA KRCKKVNGNK VNMKRTRNSL LAFQIGWIGL EQMLQSDGSL GHTKVADGPQ  780
IFPVLWSLDM SHKNNQKGCL QKAEIFVRSV RTTGFVYILV AIMIYDVHPF SCLSDSWFVV  840
VVMAEREVLV LCYWNGCIKY GPDGVYYEGS VSKKIRVKQK TKLSRLVDGL YLITGLDKQR  900
SKLDIIGRCP VAVSPNMFRY VHFPVVNDSC LEKMLDIPNN HLSINTVELY LEVKPTSGDV  960
IVPPAAFPSP MTDPGSFSKR QRIDIPVKLE KDNSNVWIED EAVADAEVGD HWDGDMTSKD  1020
SGLDEVSQVV HLTGDNSISR KHLNKGSSSG VLKPCMSSLW LDYHDLRVGL CFKDVDELKN  1080
AVYWCSLKGK CIVRETGKDG CMFECVRWKC QWSLEATRME RHGLYEIIKY AGPHTCRPIE  1140
PEDFRSEFEV DEVERVVRVH PTQSFEELKK LWKEKIGYEL QTSKVRAAKE EAIKRVFGDW  1200
DQSFEDLPKL MSAFTSSNGL LVDWKCDLFP NPMFASFCGV FWAFSQSVQG FQHCRPLMIM  1260
DTIDVDGEHQ LKLMIASGVD AANKYFPLAF AVTKEVSRDS WRWFLNNIRE KVTQRKALCL  1320
ISSPHPDILA VINEPGSRWK EPWAYHRFCL NHLCSQVSRA FSDNYLESLV KKAGFTSQKE  1380
KFDSYMKDIK LENPKARKCR ISLNFGAVYT EPVMEKLEEL QTSSVTYIVM PLDNNAFQVT  1440
TPSQRDEWIV KLSDRTCTCK EFQSCKFPCG HALGVCKKLK INPLQYVDKC YSLERLYRTY  1500
AATFSQVPEI SAWPEASGVP RLFPPIISTN VSDVTRFQLY NGLHYVTAFF FTAASETRIS  1560
LLLVLQDCVV VVMAEREIMV LCSLNGSIKY GPDGVYFEGS TVKEMRIKQN TDFSRLMDGI  1620
YLVTGLDKKT SKFEIYGKYP SVVSQSMVKF LLFPVMCDGN LERMLEVPTQ HPSINTLELC  1680
LKVKPTSVDV IVPTPLENPG GSSKRQKREQ EEVAVKKSGS NDCNSLKKDV SSGGVSDPRL  1740
RSSLWLEDDD TTRVGLCFKD SDELKKAVDW CSIRGQHKCV VRETGKDEFK FECVKWKCKW  1800
SLCASRMEQH GLFEITNSSG PRTCRHGGDG SISGYDEEVF AYEIERMVSV HPTLSVSELK  1860
KCWKEKSGYE LDEFDEIDDA QGPLQEAKEK AIKRLFGDWD QSFRLIPKFM SALHSSNKVV  1920
VDWRYEPLPN PEHASFGGMF WAFSQSVEGF KYCRPLIVVD SKHLKGKYNM KLMIASGFDA  1980
ANKHFPLAFA VTKEVSIDSW RWFLTRIREK VTQRKGLCLI TRHHPDILAV VNEPGSQWKE  2040
PWAYHRFCLN HLCSQFSRLF PQSYETESLV MQAGSSSQKE KFDSYMKDIK DKHPEAWKWL  2100
DQIPPCQWAL AHDNGLRYGI MKINTTALFA VCRSFRKVAM TGGVMHLFGE LRDAFEESFS  2160
CSRGSLNRGD VYTEPVMENL QEFVTDSAKY VITPLDGDAF QYVDDCYCAE RYYKTYAAAF  2220
SPVPVISAWP EASGVPTFFP PVIAPPPRKV TGKGKGRTKE PPSDGELRNA ILDILKAMNF  2280
QMDSFTDIIK QLADKFRIDL TLRKSSIKVM IQYELEKYAA ETEEVEGEED EEADEEEDEE  2340
AEEEEEEEEE EW
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5wx9_A9e-19901501475Ethylene-responsive transcription factor ERF096
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
14956KKRRRVKK
25054KRRRV
Cis-element ? help Back to Top
SourceLink
PlantRegMap676725400
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_020890823.10.0uncharacterized protein LOC110230917
TrEMBLQ9SH730.0Q9SH73_ARATH; F22C12.1
STRINGBo7g011620.10.0(Brassica oleracea)
STRINGXP_006391649.10.0(Eutrema salsugineum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G11140.15e-31cytokinin response factor 1