PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676724692
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 546aa    MW: 59843 Da    PI: 7.6427
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676724692genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.72.9e-11180203326
                S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHg 26 
                ++ C ++++t tCk+G++CkF H+
  676724692 180 EKDCTHYMQTRTCKFGESCKFDHP 203
                678********************8 PP
2zf-CCCH253.3e-08247266827
                GGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                ++ +t  CkyG rCkF+H++
  676724692 247 YYIKTQRCKYGLRCKFNHPR 266
                899***************96 PP
3zf-CCCH38.12.6e-12285309327
                S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaHgp 27 
                +++C f+++tG Ck+G +CkF+H++
  676724692 285 EPPCTFYMKTGKCKFGLTCKFHHPR 309
                79*********************96 PP
4zf-CCCH38.22.4e-12359384227
                -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHgp 27 
                +++ C+f+++tG CkyG++C+++H++
  676724692 359 GEVDCPFYLKTGSCKYGATCRYNHPE 384
                6899********************96 PP
5zf-CCCH40.16e-13446470226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C+++++tG+Ck+G+rC+F+H+
  676724692 446 GQSECDYYMKTGECKFGERCRFHHP 470
                7899********************8 PP
6zf-CCCH39.97e-13502524527
                --SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   5 lCrffartGtCkyGdrCkFaHgp 27 
                +C+++++tGtCkyG +CkF H+p
  676724692 502 NCPYYMKTGTCKYGTTCKFDHPP 524
                6********************96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010313.188177205IPR000571Zinc finger, CCCH-type
SMARTSM003560.011179204IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5179204IPR000571Zinc finger, CCCH-type
PfamPF006429.4E-9180203IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.5E-4183202IPR000571Zinc finger, CCCH-type
PROSITE profilePS501039.507228267IPR000571Zinc finger, CCCH-type
SMARTSM003565.4243266IPR000571Zinc finger, CCCH-type
PfamPF006426.4E-5247266IPR000571Zinc finger, CCCH-type
SMARTSM003561.1E-5282309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.619282310IPR000571Zinc finger, CCCH-type
PfamPF006429.1E-10285309IPR000571Zinc finger, CCCH-type
SuperFamilySSF902298.24E-6286310IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.7E-5287309IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.859357385IPR000571Zinc finger, CCCH-type
SMARTSM003561.5E-6357384IPR000571Zinc finger, CCCH-type
PfamPF006426.1E-10359384IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.96E-5361385IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.109.5E-5363384IPR000571Zinc finger, CCCH-type
SMARTSM003567.3E-6444471IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010315.047444472IPR000571Zinc finger, CCCH-type
SuperFamilySSF902297.2E-7444475IPR000571Zinc finger, CCCH-type
PfamPF006422.7E-10446470IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.0E-5450472IPR000571Zinc finger, CCCH-type
SMARTSM003566.8E-6497524IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.192497525IPR000571Zinc finger, CCCH-type
PfamPF006423.8E-10502524IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.1E-5502524IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.8E-5503522IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005634Cellular Componentnucleus
GO:0003723Molecular FunctionRNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 546 aa     Download sequence    Send to blast
MAHRHQLFSY ALQPSYAAAS AVSPAPPPQP QSQPKIGVSS LYGSSAADHY FPDTTFRFLA  60
RDGSEALSNY SSSFGTLTSS SAMYHHLPNA TASHLAYPQL IQQHQEAWPP GVDVPVAASA  120
VEPLPPGVKR TSEALYYPTL LGAHNTIGQT EAWYTTDYLT KRLKLESTSH LPVYPQRAGE  180
KDCTHYMQTR TCKFGESCKF DHPIWVPEGG IPDWKEAPVV PNDDYPERPG EPDCPDLTIF  240
VFTAGQYYIK TQRCKYGLRC KFNHPRTAAA ASVENQDALP ERPSEPPCTF YMKTGKCKFG  300
LTCKFHHPRD IQLPSSSQDN GSSEAITSDP DATNNPHVTF APASYHNSKG LPVRPLLQGE  360
VDCPFYLKTG SCKYGATCRY NHPERTAFTP QAAGINYPLV SSTAASVNLG LVNPAASLYQ  420
TFAQPTVHVV NQVLGGLSAI YPQRPGQSEC DYYMKTGECK FGERCRFHHP ADRLNLTSKQ  480
TSQQPNVKLS LAGYPRREGA LNCPYYMKTG TCKYGTTCKF DHPPPGEVMA KTASEADAGG  540
GTDTTQ
Functional Description ? help Back to Top
Source Description
UniProtInvolved in flower development (PubMed:11595801, PubMed:12530963). Functions in floral reproductive organ identity by binding AGAMOUS (AG) pre-mRNA and promoting its processing. Functions in association with HUA2 and HEN4 (PubMed:12530963). {ECO:0000269|PubMed:11595801, ECO:0000269|PubMed:12530963}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676724692
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024015631.10.0zinc finger CCCH domain-containing protein 37 isoform X1
SwissprotQ941Q30.0C3H37_ARATH; Zinc finger CCCH domain-containing protein 37
TrEMBLV4M1Q90.0V4M1Q9_EUTSA; Uncharacterized protein
STRINGXP_006407309.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM97612836
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G12680.10.0floral homeotic protein (HUA1)