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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676724186 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | SBP | ||||||||
Protein Properties | Length: 800aa MW: 89872.9 Da PI: 7.4806 | ||||||||
Description | SBP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | SBP | 115.4 | 3.2e-36 | 132 | 208 | 1 | 77 |
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +Cqv++Cead+se+k yh+rh+vC +++a++vl++g+ +r+CqqC++fh ls+fDe+krsCrr+L++hn+rr++k 676724186 132 RCQVPDCEADISELKGYHKRHRVCLRCANATSVLLDGEDKRYCQQCGKFHVLSDFDEGKRSCRRKLERHNNRRKRKP 208 6************************************************************************9975 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:4.10.1100.10 | 2.2E-28 | 126 | 194 | IPR004333 | Transcription factor, SBP-box |
PROSITE profile | PS51141 | 29.171 | 130 | 207 | IPR004333 | Transcription factor, SBP-box |
SuperFamily | SSF103612 | 1.96E-33 | 131 | 211 | IPR004333 | Transcription factor, SBP-box |
Pfam | PF03110 | 5.9E-27 | 133 | 206 | IPR004333 | Transcription factor, SBP-box |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0055070 | Biological Process | copper ion homeostasis | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 800 aa Download sequence Send to blast |
MSSMSQSPSP PEMDIQPPAL LDDDPSTYSS AMWDWGDLLD FAADDRLLLS PFSPVLPPPL 60 PPPHPPAQSE SYPSPDESGS GSDRVRKRDP RLLCSNFVEG MLPCSCPELD QKLEEAELPK 120 KKRVRGGSGV ARCQVPDCEA DISELKGYHK RHRVCLRCAN ATSVLLDGED KRYCQQCGKF 180 HVLSDFDEGK RSCRRKLERH NNRRKRKPVD KGGVASKQQQ VLSQNDISVI DVDDGKDNTC 240 SSDQRVEQEA SLNFQDRHIP TQGSVPFTHS INADNFVSVT GSGEAQPDEG MNDTKFELAP 300 SCGDNKSAYS TVCPTGRISF KLYDWNPAEF PRRLRHQIFQ WLATMPVELE GYIRPGCTIL 360 TVFIAMPEIM WAKLSKDPVA YLDEFILKPG KMLFGRGSMT VYLNNMIFRL MKGKTMCFTL 420 FLCGTTLNRV DVKLESPKLQ FVYPTCFEAG KPIELVVCGL NLLQPKCRFL VSFSGKYLPH 480 NYSVVPALSQ DGKRSCNNKL YRINIVNSDP NLFGPAFVEV ENESGLSNFI PLIIGDKAIC 540 SEMKLIEQKF NATLFREEQD ITACCSLTCC CRDYEERQST FTGLLLDIAW SVRVPSSECT 600 ELKVNRCQIK RYNRVLNYLI QNNSASILGN VLRNLETLVK KMEPDSLVHC TCDCDVRLLH 660 ENMSTARKQQ SHEDSKVKPA TSACCCKSNF QKDIPSRNFN QDPEAGLDCK ERIQAASLDT 720 GVKETDPLLN KEVVMNVNDI GDWPRKSCIP IHSAQTFRSR QTVFLITTFV VCFAVCAVLY 780 HPNKVTQLAV AIRTRLAHKL |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
1ul5_A | 1e-48 | 130 | 215 | 3 | 88 | squamosa promoter binding protein-like 7 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor that participates in reprogramming global gene expression during copper deficiency in order to improve the metal uptake and prioritize its distribution to copper proteins of major importance (Probable). Binds directly to 5'-GTAC-3' motifs in the microRNA (miRNA) promoter of the stress-responsive miRNAs miR398b and miR398c to activate their transcription. During copper deficiency, activates the copper transporters COPT1 and COPT2, and the copper chaperone CCH, directly or indirectly via miRNAs. Required for the expression of the miRNAs miR397, miR408 and miR857 (PubMed:19122104). Acts coordinately with HY5 to regulate miR408 and its target genes in response to changes in light and copper conditions (PubMed:25516599). Activates miR857 and its target genes in response to low copper conditions (PubMed:26511915). Involved in cadmium stress response by regulating miR397a, miR398b, miR398c and miR857 (PubMed:27352843). Required for iron homeostasis during copper deficiency (PubMed:22374396). {ECO:0000269|PubMed:19122104, ECO:0000269|PubMed:22374396, ECO:0000269|PubMed:25516599, ECO:0000269|PubMed:26511915, ECO:0000269|PubMed:27352843}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00604 | PBM | Transfer from AT5G18830 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676724186 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK353552 | 0.0 | AK353552.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-52-E05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_006400438.1 | 0.0 | squamosa promoter-binding-like protein 7 | ||||
Swissprot | Q8S9G8 | 0.0 | SPL7_ARATH; Squamosa promoter-binding-like protein 7 | ||||
TrEMBL | E4MYF5 | 0.0 | E4MYF5_EUTHA; mRNA, clone: RTFL01-52-E05 | ||||
TrEMBL | V4N865 | 0.0 | V4N865_EUTSA; Uncharacterized protein | ||||
STRING | XP_006400438.1 | 0.0 | (Eutrema salsugineum) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6358 | 26 | 44 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18830.1 | 0.0 | squamosa promoter binding protein-like 7 |