PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Orthologous Group |

Basic Information? help Back to Top

TF ID

676724184

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

ZF-HD

Protein Properties

Length: 124aa MW: 13708.6 Da PI: 7.8422

Description

ZF-HD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676724184	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	ZF-HD_dimer	27.8	5.8e-09	6	58	2	59
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRrevee 59 ++v+Y eC ++ g D C f+++ geeg ++a+ C CgCH FH ++ve+ 676724184 6 KTVTYGECVN----KIRGVKKDYCAHFIAA-GEEGMPEAFFCRGCGCHLCFHEKHVET 58 6789999974....789999*******9.999******************9876 PP
2	ZF-HD_dimer	90.4	1.7e-28	65	118	2	56
ZF-HD_dimer 2 ekvrYkeClkNhAaslGghavDGCgEfmpsegeegtaaalkCaACgCHRnFHRre 56 ++vrY eC kNhA ++Gg+ vDGCgEf+++ ge+gt++al CaACgCHR+FH+++ 676724184 65 ATVRYGECVKNHAPNTGGNWVDGCGEFVAA-GEKGTPEALSCAACGCHRSFHKKR 118 579************************9.999****************997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
ProDom	PD125774	7.0E-5	6	58	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	8.6E-7	8	56	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
ProDom	PD125774	8.0E-15	65	119	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
Pfam	PF04770	4.9E-27	67	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
TIGRFAMs	TIGR01566	1.6E-24	68	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain
PROSITE profile	PS51523	23.412	69	118	IPR006456	ZF-HD homeobox protein, Cys/His-rich dimerisation domain

Sequence ? help Back to Top
Protein Sequence Length: 124 aa Download sequence Send to blast
MGHWKKTVTY GECVNKIRGV KKDYCAHFIA AGEEGMPEAF FCRGCGCHLC FHEKHVETNY 60 DRSDATVRYG ECVKNHAPNT GGNWVDGCGE FVAAGEKGTP EALSCAACGC HRSFHKKRVL 120 LICY

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676724184

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_010454130.1	1e-51	PREDICTED: zinc-finger homeodomain protein 8-like
TrEMBL	A0A1J3ELS0	2e-48	A0A1J3ELS0_NOCCA; Mini zinc finger protein 1 (Fragment)
STRING	XP_010454130.1	5e-51	(Camelina sativa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM17489	7	8

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G74660.1	4e-21	mini zinc finger 1