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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676723362 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | bZIP | ||||||||
Protein Properties | Length: 482aa MW: 53704.5 Da PI: 8.3612 | ||||||||
Description | bZIP family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | bZIP_1 | 31.5 | 3.8e-10 | 178 | 219 | 4 | 45 |
XCHHHCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH CS bZIP_1 4 lkrerrkqkNReAArrsRqRKkaeieeLeekvkeLeaeNkaL 45 k rr+++NReAAr+sR+RKka++++Le +L++ ++L 676723362 178 AKTLRRLAQNREAARKSRLRKKAYVQQLESSRIKLSQLEQEL 219 5889*************************8766666655544 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SMART | SM00338 | 6.5E-7 | 175 | 252 | IPR004827 | Basic-leucine zipper domain |
PROSITE profile | PS50217 | 9.289 | 177 | 221 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF00170 | 2.2E-7 | 178 | 219 | IPR004827 | Basic-leucine zipper domain |
CDD | cd14708 | 1.89E-23 | 179 | 231 | No hit | No description |
SuperFamily | SSF57959 | 9.64E-7 | 179 | 221 | No hit | No description |
Gene3D | G3DSA:1.20.5.170 | 1.0E-7 | 180 | 223 | No hit | No description |
PROSITE pattern | PS00036 | 0 | 182 | 197 | IPR004827 | Basic-leucine zipper domain |
Pfam | PF14144 | 2.4E-29 | 260 | 335 | IPR025422 | Transcription factor TGA like domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 482 aa Download sequence Send to blast |
MANHRVISEA TNHNHNHHLS YSLLHGLSNN HPAPGFINQD GSSSFDFGEL EEAIVLQGVK 60 YRNDETKPPL FAGGGTTTLE MFPSWPIRTH QTPPTESSKS GGESTDSGSA NFSGKAEQPE 120 SPMSSKQNHH LMLQHHRNNN MANSSSASGL PSTSRTPAPP KASEDKRKAT TSGKLLDAKT 180 LRRLAQNREA ARKSRLRKKA YVQQLESSRI KLSQLEQELQ RARSQGLFMG GCGPPGPNIT 240 SGAAMFDMEY GRWLEDDNRH MSEIRTGLQA HLSDNDLRLI VDGYIAHFDE VFRLKAVAAK 300 ADVFHLIIGT WMSPAERCFI WMAGFRPSDL IKILVSQMDL LTEQQLMGIY SLQHSSQQAE 360 EALSQGLEQL QQSLIDTLAA SPVIDGMQQM AVALGKISNL EGFIRQADNL RQQTVHQLRR 420 ILTVRQAARC FLVIGEYYGR LRALSSLWLS RPRETLISDE TSCQTTTDLQ MVQSSRNHFS 480 NF |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Together with TGA10, basic leucine-zipper transcription factor required for anther development, probably via the activation of SPL expression in anthers and via the regulation of genes with functions in early and middle tapetal development (PubMed:20805327). Required for signaling responses to pathogen-associated molecular patterns (PAMPs) such as flg22 that involves chloroplastic reactive oxygen species (ROS) production and subsequent expression of H(2)O(2)-responsive genes (PubMed:27717447). {ECO:0000269|PubMed:20805327, ECO:0000269|PubMed:27717447}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00131 | DAP | Transfer from AT1G08320 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676723362 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: Induced by flg22 in leaves. {ECO:0000269|PubMed:27717447}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AJ314757 | 0.0 | AJ314757.1 Arabidopsis thaliana mRNA for bZIP transcription factor (AtbZIP21 gene). | |||
GenBank | HQ132743 | 0.0 | HQ132743.1 Arabidopsis thaliana bZIP21 (At1g08320) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013638917.1 | 0.0 | PREDICTED: transcription factor TGA2 isoform X1 | ||||
Swissprot | Q93XM6 | 0.0 | TGA9_ARATH; Transcription factor TGA9 | ||||
TrEMBL | A0A3P6F109 | 0.0 | A0A3P6F109_BRAOL; Uncharacterized protein | ||||
STRING | Bo5g008940.1 | 0.0 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM5524 | 24 | 41 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT1G08320.3 | 0.0 | bZIP family protein |
Publications ? help Back to Top | |||
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