PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676723172

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

MYB_related

Protein Properties

Length: 613aa MW: 64527.6 Da PI: 8.9526

Description

MYB_related family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676723172	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	24.6	5.7e-08	194	238	1	44
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHT.TTS-HHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmg.kgRtlkqcksrw 44 r++W+ +Ed l+ avk+ G g+W+ I + Rt+ q+ rw 676723172 194 RQKWSVDEDAELIAAVKRCGEGNWAHIVKGEFrGERTASQLSQRW 238 89************************9764333589999988888 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	13.044	189	246	IPR017930	Myb domain
Gene3D	G3DSA:1.10.10.60	1.1E-11	190	241	IPR009057	Homeodomain-like
SuperFamily	SSF46689	4.16E-11	191	244	IPR009057	Homeodomain-like
SMART	SM00717	8.6E-8	193	244	IPR001005	SANT/Myb domain
Pfam	PF00249	3.2E-6	194	238	IPR001005	SANT/Myb domain
CDD	cd11660	7.86E-13	195	243	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 613 aa Download sequence Send to blast
MVDSSSKKTI SEGDIATLLQ RYDVKTILRL LQEMSFYSDI KMDWNELVKK TTTGITNPRE 60 YQLLWRHLSY RDPLLPVEDN AHPLDDDSDM ECELEVSPSP SVEASLEAIA HVKVMAASYV 120 PSESDIVDDS SCEAPLTINI PYSLPEGTQE ASESPWSSRG MNITFPVCLP KATPTEWMNG 180 NGSATSSMAS RRKRQKWSVD EDAELIAAVK RCGEGNWAHI VKGEFRGERT ASQLSQRWAL 240 IRRRYDTSTS VSQSGIQQTE AQIAVNHALS LALGNRPPSE KVAVGVSPGT SSCTITGTQG 300 NEGRSSQGQQ QSKPVAVQTL SRAATSVPAS KSRIGVKKTT GSSTSRSALM VTANSTAAAF 360 MGGVSTAASV PKVEPAKTDA PLVLKNEPVK NASIACMPCP SGSLVVPKVE PGKSVAASSI 420 TKTVGNTRPV ANGNLNVTPS SSLMASRSAG STVLSASTHL ASASKIVSNQ RVFADSVPAT 480 VLPPKQTTET VSCRPDGGQK EQARGDGASS LVAIQPNKMT STNSEITSRR QQATQAQSPN 540 ILPRRILVAQ TAVLGAANQN LVDKTAVPSI IGAGSQSKPK CEVNNKVGSV INVGNACGKS 600 PEVASVGGTG QGV

Sequence ? help Back to Top

Protein Sequence Length: 613 aa Download sequence Send to blast

MVDSSSKKTI SEGDIATLLQ RYDVKTILRL LQEMSFYSDI KMDWNELVKK TTTGITNPRE  60
YQLLWRHLSY RDPLLPVEDN AHPLDDDSDM ECELEVSPSP SVEASLEAIA HVKVMAASYV  120
PSESDIVDDS SCEAPLTINI PYSLPEGTQE ASESPWSSRG MNITFPVCLP KATPTEWMNG  180
NGSATSSMAS RRKRQKWSVD EDAELIAAVK RCGEGNWAHI VKGEFRGERT ASQLSQRWAL  240
IRRRYDTSTS VSQSGIQQTE AQIAVNHALS LALGNRPPSE KVAVGVSPGT SSCTITGTQG  300
NEGRSSQGQQ QSKPVAVQTL SRAATSVPAS KSRIGVKKTT GSSTSRSALM VTANSTAAAF  360
MGGVSTAASV PKVEPAKTDA PLVLKNEPVK NASIACMPCP SGSLVVPKVE PGKSVAASSI  420
TKTVGNTRPV ANGNLNVTPS SSLMASRSAG STVLSASTHL ASASKIVSNQ RVFADSVPAT  480
VLPPKQTTET VSCRPDGGQK EQARGDGASS LVAIQPNKMT STNSEITSRR QQATQAQSPN  540
ILPRRILVAQ TAVLGAANQN LVDKTAVPSI IGAGSQSKPK CEVNNKVGSV INVGNACGKS  600
PEVASVGGTG QGV

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676723172

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_020868169.1	0.0	uncharacterized protein LOC9328581 isoform X1
TrEMBL	D7KJT3	0.0	D7KJT3_ARALL; DNA binding protein
STRING	Bostr.25494s0029.1.p	0.0	(Boechera stricta)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4823	27	51

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G09710.1	0.0	MYB_related family protein