PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676722094
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family TCP
Protein Properties Length: 348aa    MW: 38546.1 Da    PI: 6.887
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676722094genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP97.32.8e-3027130189
        TCP   1 aagkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............ 88 
                a+g+kdrhsk+ T++g+RdRRvRlsa++a++f+d+qd+LG+d++sk+++WL+++ak ai++l  ++ + ++ ++++ssss+ +  + +            
  676722094  27 ATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGYDRPSKAVDWLIKKAKSAIDKLETSQEPENNTTKPGSSSSEPNLVNTQtqfvatanldse 126
                589**************************************************************66666555555555555422222223344444444 PP

        TCP  89 ...k 89 
                   k
  676722094 127 damK 130
                4431 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.5E-2828142IPR005333Transcription factor, TCP
PROSITE profilePS5136932.4293088IPR017887Transcription factor TCP subgroup
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009965Biological Processleaf morphogenesis
GO:0030154Biological Processcell differentiation
GO:0045962Biological Processpositive regulation of development, heterochronic
Sequence ? help Back to Top
Protein Sequence    Length: 348 aa     Download sequence    Send to blast
MGLKGYSVGG DGVGEIIEVQ GGHIIRATGR KDRHSKVFTS KGPRDRRVRL SAHTAIQFYD  60
VQDRLGYDRP SKAVDWLIKK AKSAIDKLET SQEPENNTTK PGSSSSEPNL VNTQTQFVAT  120
ANLDSEDAMK TFFPATTTTT SVGGTNMNFQ NYPHHHDDDN IVSRTTTTSN LSQDLGLSLH  180
PFQGNNNNNT VVPETNSFAT AHFETFGRIP GWNHHDLTMT SSSSPSEQQE QQEQERSNGG  240
FMMNHHHHHQ PSMMTLLSSQ QQQLFLGGQQ QQRGTLQSSL FPHSFRSWDQ HQTTSDHHHH  300
NQASPAMFAS SSQFGSHGMM MMQGLSFPIH GDEATQPNSS SSPPNSHL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A4e-223588154Putative transcription factor PCF6
5zkt_B4e-223588154Putative transcription factor PCF6
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtPlays a pivotal role in the control of morphogenesis of shoot organs by negatively regulating the expression of boundary-specific genes such as CUC genes, probably through the induction of miRNA (e.g. miR164). Participates in ovule develpment (PubMed:25378179). {ECO:0000269|PubMed:17307931, ECO:0000269|PubMed:25378179}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676722094
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK3530250.0AK353025.1 Thellungiella halophila mRNA, complete cds, clone: RTFL01-19-K11.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018434158.10.0PREDICTED: transcription factor TCP10
SwissprotO822771e-147TCP10_ARATH; Transcription factor TCP10
TrEMBLA0A1J3IRA70.0A0A1J3IRA7_NOCCA; Transcription factor TCP10
STRINGBo4g053680.10.0(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM141581924
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G31070.11e-114TCP domain protein 10
Publications ? help Back to Top
  1. Koyama T,Sato F,Ohme-Takagi M
    Roles of miR319 and TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2017. 175(2): p. 874-885
    [PMID:28842549]
  2. Bresso EG,Chorostecki U,Rodriguez RE,Palatnik JF,Schommer C
    Spatial Control of Gene Expression by miR319-Regulated TCP Transcription Factors in Leaf Development.
    Plant Physiol., 2018. 176(2): p. 1694-1708
    [PMID:29133375]