PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721792
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 730aa    MW: 81922.7 Da    PI: 8.5244
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721792genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH20.86.6e-07261282426
                ---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   4 elCrffartGtCkyGdrCkFaHg 26 
                ++Cr+fa +G C+ G +C+F+H 
  676721792 261 VPCRYFA-SGNCRNGTSCRFSHH 282
                5899555.5*************6 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5010315.131257284IPR000571Zinc finger, CCCH-type
SMARTSM003561.9E-4258283IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-5260282IPR000571Zinc finger, CCCH-type
PfamPF006421.4E-4262282IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.107.6E-6262287IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 730 aa     Download sequence    Send to blast
MSGSGRKRVS KWDSKEEDTE HLAGNDYVGK SASFFRDKDP EHARFYSESN GRNGSRRSAP  60
DHDDDDDVEP NLKSRQHPGE AWPPRGRVSH DDGDAAMMSY YDTRKSSEQD ESRQPYFRQS  120
PSRDRPRTRR SGSRSNSRSM SRSRSRSPLQ RVRRDAGGSY DRHKTKARVS PRSGREVDGR  180
YNRAGDCDWE AKNRKTRDSR EQHPVRVGGR FDYGSDFPED SYSRRETSDP VMRSHRNEPA  240
RDRETQRRDV PEREYNRISN VPCRYFASGN CRNGTSCRFS HHVPERKPQD EMFNRHANNN  300
NNQSGTAERM RNSHRWNDIE RSDTGKSSER AKSNNNSSWI DDMEMSPDWN YGVKPLKKPL  360
NEEHGVLKDN LAPTYEHGSA AISQQDGNRR SIGMFPTVGE KTVASSHHGS GNNLANSAPP  420
VQGFNQNIEN HNAVPYQSTP LAVGGQVLLP AAATHLPGGL NSSNHENGNA QSTVSREELN  480
HISNISASLA QFFGNGQPIP HLQSALNPKQ AMQVPEVYGR KEQSSHTQSD LLSNNSIQTG  540
VVPAVPALQI NNIDAQQVRI PDNFVSLAGN PKVSSEEDRD KKTDEEASKE PDVRKTGHEE  600
EETAEDAENV VVEEEEDDGA GDETSKKEKD PKGMRAFKFA LVEIVKELLK PAWKEGGMNK  660
DAYKNIVKKV VDKVTGAIQA GNIPQTQEKI DHYLSASKPK LTKLVQRLGK DQAKLMFAFV  720
VYIPEILSGK
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721792
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_002891459.10.0zinc finger CCCH domain-containing protein 38
TrEMBLD7KD690.0D7KD69_ARALL; Predicted protein
STRINGBostr.26675s0284.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM91601215
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G33835.11e-15C3H family protein