PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676721682
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 513aa    MW: 57983.2 Da    PI: 6.2705
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676721682genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM175.61.4e-5491351127
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                lp GfrF+Ptdeelv++yL+ k++g++ e+ +vi+evd++k+ePwdLp  + +k+e+ ew+fF++rd+ky++g+r+nrat+sgyWkatgkd++++s k++
  676721682   9 LPLGFRFRPTDEELVNHYLRLKINGRHSEV-RVIPEVDVCKWEPWDLPgfSVIKTEDPEWFFFCPRDRKYPNGHRSNRATESGYWKATGKDRSIKS-KKT 106
                699************************999.99***************6447888889**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyr 127
                l+g+kktLvfy+grapkge+t+W+mheyr
  676721682 107 LIGMKKTLVFYRGRAPKGERTNWIMHEYR 135
                ****************************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019411.44E-604146IPR003441NAC domain
PROSITE profilePS5100555.6069187IPR003441NAC domain
PfamPF023659.7E-2910135IPR003441NAC domain
SuperFamilySSF1019411.44E-60175187IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0045892Biological Processnegative regulation of transcription, DNA-templated
GO:0071470Biological Processcellular response to osmotic stress
GO:1900426Biological Processpositive regulation of defense response to bacterium
GO:0005634Cellular Componentnucleus
GO:0005789Cellular Componentendoplasmic reticulum membrane
GO:0005886Cellular Componentplasma membrane
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005516Molecular Functioncalmodulin binding
Sequence ? help Back to Top
Protein Sequence    Length: 513 aa     Download sequence    Send to blast
MCAVSMESLP LGFRFRPTDE ELVNHYLRLK INGRHSEVRV IPEVDVCKWE PWDLPGFSVI  60
KTEDPEWFFF CPRDRKYPNG HRSNRATESG YWKATGKDRS IKSKKTLIGM KKTLVFYRGR  120
APKGERTNWI MHEYRPTHKD LDGTAPGQVC SSPLVSFLVS FALLTLSFYI QPLLLQSPFV  180
LCRLFHKLGD RLNGVKSDDT PSASKYSPAD TSSDLVQETP TSDTAVDDSA SWFTPVDGTM  240
FEAYPPQKWL PTEPEDAPLM DSTYAADDFG YDEIGVRFQD GTSEPDVSLT ELLEEVFNNP  300
DDFSCEESTF QAPNSVPAEN VSLNDLDMVQ FQYGSDREAS GWPMDSLSAN PTTNSFYTDF  360
VHPKQMINHN AETNLREGRG IKIRTRQPQN QPSTALINQG IAPRRIRLQL QSRSDENQFE  420
VKPREQMNAG HTVIPEAKEE AVGTYSGTRY DALVNPRIKI RARGTTEQVR SDRIQGNEGR  480
SKKSREGKRW KLVATVMVAM VVGVAVGMWR LGS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A4e-43813514139Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (PubMed:18443413, PubMed:24329768). Calmodulin-regulated transcriptional repressor. Binds several synthetic promoters with randomly selected binding sites (PubMed:17947243). Functions synergistically with SNI1 as negative regulator of pathogen-induced PR1 expression and basal resistance to a virulent strain of P.syringae. Binds directly to the promoter of the PR1 gene (PubMed:22826500). Acts as positive regulator of innate immunity. Involved in the effector-triggered immunity (ETI) induction of immunity-related gene expression (PubMed:24329768). Mediates osmotic stress signaling in leaf senescence by up-regulating senescence-associated genes (PubMed:18443413). {ECO:0000269|PubMed:17947243, ECO:0000269|PubMed:18443413, ECO:0000269|PubMed:22826500, ECO:0000269|PubMed:24329768}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00108PBMTransfer from AT4G35580Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676721682
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006286077.10.0protein NTM1-like 9 isoform X1
SwissprotF4JN350.0NTL9_ARATH; Protein NTM1-like 9
TrEMBLR0H2V40.0R0H2V4_9BRAS; Uncharacterized protein
STRINGBostr.7867s1416.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM55942848
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G35580.10.0NAC transcription factor-like 9
Publications ? help Back to Top
  1. Zheng XY, et al.
    Spatial and temporal regulation of biosynthesis of the plant immune signal salicylic acid.
    Proc. Natl. Acad. Sci. U.S.A., 2015. 112(30): p. 9166-73
    [PMID:26139525]
  2. Guo T, et al.
    Lamin-like Proteins Negatively Regulate Plant Immunity through NAC WITH TRANSMEMBRANE MOTIF1-LIKE9 and NONEXPRESSOR OF PR GENES1 in Arabidopsis thaliana.
    Mol Plant, 2017. 10(10): p. 1334-1348
    [PMID:28943325]