|
Plant Transcription
Factor Database
|
Transcription Factor Information
Basic
Information? help
Back to Top |
TF ID |
676721038 |
Organism |
|
Taxonomic ID |
|
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
Family |
SRS |
Protein Properties |
Length: 314aa MW: 33697.6 Da PI: 6.7804 |
Description |
SRS family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
676721038 | genome | VEGI | View CDS |
|
Signature Domain? help Back to Top |
|
No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | DUF702 | 221.3 | 2e-68 | 88 | 242 | 2 | 154 |
DUF702 2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasa....aeaaskrkrelkskkqsalsstklssaesk 97
rs t+sC+dCGnqakkdC+h+RCRtCCksrgfdC+thv+stW+p+a+rrerqqql++++s + s + +kr+r+ ++ +ss++l+s+++
676721038 88 RSITISCRDCGNQAKKDCTHMRCRTCCKSRGFDCSTHVRSTWIPVARRRERQQQLHMSTSGGSGSGsgggGSTIPKRHRD---TTLPGTSSSHLPSNSAG 184
67899***************************************************999887766555555666666666...56677788889999999 PP
DUF702 98 keletsslPeevsseavfrcvrvssvdd.geeelaYqtavsigGhvfkGiLydqGlee 154
e+ +s+P+e+ss+a+frcv++s+vdd g+ ++aYqt+v+igGh+fkGiLydqG+e+
676721038 185 LEMGEASFPPELSSDALFRCVKMSGVDDgGDGQYAYQTTVNIGGHLFKGILYDQGPES 242
****************************8899************************96 PP
|
Sequence ? help Back to Top |
Protein Sequence Length: 314 aa
Download sequence Send
to blast |
MAGIFSLGGN TNNNEDEGEE NQQQQKTNWV WYRSNTNTNN INPSSSLWQI PPEQQQLMHH 60 HQPHPQQQSL DLYPGHQIDV SDLATSSRSI TISCRDCGNQ AKKDCTHMRC RTCCKSRGFD 120 CSTHVRSTWI PVARRRERQQ QLHMSTSGGS GSGSGGGGST IPKRHRDTTL PGTSSSHLPS 180 NSAGLEMGEA SFPPELSSDA LFRCVKMSGV DDGGDGQYAY QTTVNIGGHL FKGILYDQGP 240 ESSYMSGGSG GSDHQSSSAG GGNPFNTPAM NDGGGGGGSS GMFVDPNSSA YYSSNMTTMF 300 VPPGTQFYQN PPRS
|
Functional Description ? help
Back to Top |
Source |
Description |
UniProt | Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). {ECO:0000269|PubMed:12361963, ECO:0000269|PubMed:16740145, ECO:0000269|PubMed:16740146, ECO:0000269|PubMed:18811619}. |
Annotation --
Nucleotide ? help
Back to Top |
Source |
Hit ID |
E-value |
Description |
GenBank | GU205264 | 0.0 | GU205264.1 Brassica rapa subsp. pekinensis stylish 2a (STY2a) mRNA, complete cds. |
Best hit in Arabidopsis thaliana ? help
Back to Top |
Hit ID |
E-value |
Description |
AT4G36260.1 | 1e-120 | Lateral root primordium (LRP) protein-related |