PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720600
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family M-type_MADS
Protein Properties Length: 315aa    MW: 36479.2 Da    PI: 8.0976
Description M-type_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720600genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF52.56.4e-171150342
               --SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-T CS
     SRF-TF  3 ienksnrqvtfskRrngilKKAeELSvLCdaevaviifss 42
               i n+s r+ tf kR++g +KK +ELSvLC++e++ +ifs+
  676720600 11 IPNDSVRKATFNKRKKGFFKKIHELSVLCGIEACAVIFSP 50
               889***********************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006617.619149IPR002100Transcription factor, MADS-box
SMARTSM004324.0E-21160IPR002100Transcription factor, MADS-box
CDDcd002667.64E-34285No hitNo description
SuperFamilySSF554551.26E-23294IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-9323IPR002100Transcription factor, MADS-box
PfamPF003191.9E-161150IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-92338IPR002100Transcription factor, MADS-box
PRINTSPR004045.3E-93859IPR002100Transcription factor, MADS-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 315 aa     Download sequence    Send to blast
MTRTKLNLAY IPNDSVRKAT FNKRKKGFFK KIHELSVLCG IEACAVIFSP FSSGPEVWPS  60
NSVVKNVVAK FEKVPEMEQE KKMVNHEGFL RQSIIKAREN NSKKMRDNQD MALKELMFQV  120
LDGKVDMRQL TDKNRDDLCK YIDQYLKELY HHRNQTLNQP HPEYGESSSA ANAAELAPMG  180
SSSSFPTPDV FNPPQPVKEL WASRPIISPS QQKSEPVDTF GINFLPAASG QQGHYQMMNL  240
VGVYYQHENL NLNLNNQYEQ KFEDYPIVAQ DGTYNQRQIP NHQQEEWLVN QMMNHPHQMR  300
FPMGDGNNRY YYHQS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720600
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408018.11e-142agamous-like MADS-box protein AGL80 isoform X1
TrEMBLV4NS161e-141V4NS16_EUTSA; Uncharacterized protein
STRINGXP_006408018.11e-141(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM7028415
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G05860.12e-92M-type_MADS family protein