PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676720558 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | B3 | ||||||||
Protein Properties | Length: 929aa MW: 101770 Da PI: 6.5183 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 39.6 | 9.6e-13 | 581 | 654 | 18 | 97 |
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvf 97 pkkf++ h+ k e+k ++ e +sWev + ++ + +++GW++ +++ gL +gD+++Fkl++ +e ++kv 676720558 581 TPKKFVDMHMPK--ETKLFKILAEGKKSWEVLY--LATDTKSRFSAGWSRLARELGLVVGDVCTFKLIK--PTEILLKVS 654 59****999855..55689999999********..5555555599*********************987..444566655 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF12819 | 1.3E-38 | 30 | 207 | IPR024788 | Malectin-like carbohydrate-binding domain |
Pfam | PF12819 | 2.0E-10 | 276 | 371 | IPR024788 | Malectin-like carbohydrate-binding domain |
Pfam | PF08263 | 2.4E-5 | 410 | 444 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
SuperFamily | SSF52058 | 2.72E-8 | 430 | 500 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 5.9E-9 | 433 | 499 | IPR032675 | Leucine-rich repeat domain, L domain-like |
PROSITE profile | PS50863 | 11.307 | 564 | 657 | IPR003340 | B3 DNA binding domain |
SuperFamily | SSF101936 | 2.16E-16 | 564 | 655 | IPR015300 | DNA-binding pseudobarrel domain |
Gene3D | G3DSA:2.40.330.10 | 3.3E-15 | 564 | 655 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 1.84E-13 | 565 | 647 | No hit | No description |
SMART | SM01019 | 1.7E-13 | 567 | 657 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 1.7E-9 | 580 | 648 | IPR003340 | B3 DNA binding domain |
Pfam | PF12819 | 4.0E-22 | 667 | 802 | IPR024788 | Malectin-like carbohydrate-binding domain |
Pfam | PF08263 | 0.017 | 805 | 827 | IPR013210 | Leucine-rich repeat-containing N-terminal, plant-type |
SuperFamily | SSF52058 | 1.93E-15 | 816 | 909 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene3D | G3DSA:3.80.10.10 | 1.1E-18 | 817 | 908 | IPR032675 | Leucine-rich repeat domain, L domain-like |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0003677 | Molecular Function | DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 929 aa Download sequence Send to blast |
MSHLRLILLA VLSLVSSSLS QPSPPSAVLI DCGASASSVI DGRRWQSDED FVSSGTSRNV 60 SDQVLDQVLS TVRSFPLSLD GTRRKFCYVV GVSRGWKYMI RTTFFYGGVN GKDNPPPVFD 120 QIVDGTFWGV VNTTVDYADG LASYYEAVFL AQGKSISVCI ASNSYTTSDP FISALELVRL 180 DGTVYNSTDF GAFGLSLVAR HAFGYSGPII SLQNVASFGM EAMWSVAGLV LGALFAKLDS 240 TKQSEIGSFW FLEPSAFEDI QHGSXSRIFN TDLRANQIQP LEFTWPPMPL TKSVYYIALY 300 FAHDSDSLAD GSRVFDVSVN GITYYKELSV TPAGAVIFAS RWPLEGLTTL TLSPRSGSTL 360 APLINGGEMF ELISLGGKTL VRDGTTVNST EWLKKFLYAD CVFLLPCAVT ALNAIKSSFQ 420 NVPVDWNGDP CMPKNYSWSG VTCSEGPRIR IVALNLTNMG LSGSLAPEIA KLTALSSMFL 480 QNNNLTGQIP SNLLQKPGLE LRTSELKLSL HGFIQIVHDE LVKLMGGEXL KKQKKAKETK 540 ISKKNKKKVN TVCNDVEAGT SSLVPEFNVT IRKSHLLFLG TPKKFVDMHM PKETKLFKIL 600 AEGKKSWEVL YLATDTKSRF SAGWSRLARE LGLVVGDVCT FKLIKPTEIL LKVSRDDVVV 660 DDDDDDYADG TFWGVVNTTA NYADGLASYY EAVFLAQGKS ISVCIASNSY TTSDPFISAL 720 ELVRLDGTVY NSTDFGAFGL SLVARHAFGY SGPIIRFPDD EFDRFWEPYS LNSTVPNNRK 780 LEVSGFWNLP PSRIFNTDLR ANQNVPVDWN GDPCMPKNYS WSGVTCSEGP RIRIVALNLT 840 NMGLSGSLAP EIAKLTALSS IWLGNNSLSG SIPNFGSLKL LESVHLEDNR FSGNFPSFFG 900 GVPRLRELIS CAYCLLLLLK ILALSMEKT |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676720558 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013693069.1 | 0.0 | leucine-rich repeat receptor-like serine/threonine-protein kinase At2g14510 | ||||
TrEMBL | V4M004 | 0.0 | V4M004_EUTSA; Uncharacterized protein | ||||
STRING | XP_006408001.1 | 0.0 | (Eutrema salsugineum) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G18000.1 | 5e-48 | VERDANDI |