PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676720476
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 450aa    MW: 47530 Da    PI: 8.1958
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676720476genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH38.22.3e-124873227
               -S---SGGGGTS--TTTTT-SS-SSS CS
    zf-CCCH  2 ktelCrffartGtCkyGdrCkFaHgp 27
               +++ C +++rtG C yG+rC+F+H++
  676720476 48 DEPDCIYYLRTGVCGYGSRCRFNHPR 73
               6899********************96 PP
2zf-CCCH30.56.4e-1097116827
                GGGGTS--TTTTT-SS-SSS CS
    zf-CCCH   8 ffartGtCkyGdrCkFaHgp 27 
                +f+rtGtCk+G++Ck++H++
  676720476  97 HFMRTGTCKFGASCKYHHPR 116
                8*****************96 PP
3zf-CCCH39.49.8e-13137161226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                ++++C++++rtG+Ck+G +C+F+H+
  676720476 137 GEKECSYYMRTGQCKFGLTCRFNHP 161
                7899********************9 PP
4zf-CCCH39.11.2e-12295319226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                +++ C++f+rtG Ck+G++C+++H+
  676720476 295 DQPACQYFMRTGDCKFGSSCRYHHP 319
                6899********************9 PP
5zf-CCCH32.61.4e-10341365226
                -S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   2 ktelCrffartGtCkyGdrCkFaHg 26 
                + + C +fa+ G+Ck+G+ CkF H+
  676720476 341 GVAQCTHFAQHGICKFGPACKFDHS 365
                6788********************8 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003561.5E-44673IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.2394674IPR000571Zinc finger, CCCH-type
PfamPF006429.7E-104873IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.88E-65074IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.101.9E-55273IPR000571Zinc finger, CCCH-type
SMARTSM003560.7393116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.04796117IPR000571Zinc finger, CCCH-type
PfamPF006421.5E-797116IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.408135163IPR000571Zinc finger, CCCH-type
SMARTSM003567.4E-6135162IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.7E-5137162IPR000571Zinc finger, CCCH-type
PfamPF006423.3E-10137161IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.5E-4141160IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.164293321IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-6293320IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.09E-6295322IPR000571Zinc finger, CCCH-type
PfamPF006425.1E-10295319IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.4E-5299319IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.939339367IPR000571Zinc finger, CCCH-type
SMARTSM003563.6E-4339366IPR000571Zinc finger, CCCH-type
PfamPF006423.2E-8341365IPR000571Zinc finger, CCCH-type
SuperFamilySSF902291.24E-5342367IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.105.5E-4345366IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 450 aa     Download sequence    Send to blast
MERYGRAGEE GSRSDPSLDW TGQTGVEASA SVWRGGGGGG EAYPERPDEP DCIYYLRTGV  60
CGYGSRCRFN HPRDRGAVIG GVRGGDGALP ERMGHPHFMR TGTCKFGASC KYHHPRQGGG  120
SVTPVSQSYL GYPLRPGEKE CSYYMRTGQC KFGLTCRFNH PVPLAVQQQP QPQPQQPQPQ  180
LQTIYPTLQS QSLPSSQQYG LVLARPSLLP GSYLPSHYGP PMVLPPGMVA YPGWNPYQPS  240
LTAMPSPGTQ PSIGSSSVYG IAPLSPSGTA YSGTYQSGGP SLTTPKEQSF PQRPDQPACQ  300
YFMRTGDCKF GSSCRYHHPL DAVQPKTGVL FSSIGLPLRP GVAQCTHFAQ HGICKFGPAC  360
KFDHSISSSL SYSPSASSLT DMPVAPYPIG SSSLSGASAP ISSSNEPTKE AVTAAVSSPV  420
VSGLSSQEPA ETSGDSASVS GSIEAKTSSS
Cis-element ? help Back to Top
SourceLink
PlantRegMap676720476
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2304380.0AK230438.1 Arabidopsis thaliana mRNA for hypothetical protein, complete cds, clone: RAFL25-43-G06.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006407949.10.0zinc finger CCCH domain-containing protein 34
SwissprotQ9SQU40.0C3H34_ARATH; Zinc finger CCCH domain-containing protein 34
TrEMBLV4M3D60.0V4M3D6_EUTSA; Uncharacterized protein
STRINGXP_006407949.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM17792786
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G06410.10.0C3H family protein
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]