PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676719604 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | LBD | ||||||||
Protein Properties | Length: 255aa MW: 29172.8 Da PI: 4.5028 | ||||||||
Description | LBD family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | DUF260 | 28.6 | 4.1e-09 | 1 | 44 | 58 | 101 |
DUF260 58 msslvyeAearardPvyGavgvilklqqqleqlkaelallkeel 101 m+s+++++ +r ++Pv+G++gv ++lq + +++el++++++l 676719604 1 MKSIIFQSYVREKNPVHGCLGVTQHLQYMIWLAEEELKAVNSQL 44 89************************************999875 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Pfam | PF03195 | 2.2E-5 | 1 | 41 | IPR004883 | Lateral organ boundaries, LOB |
PROSITE profile | PS50891 | 9.721 | 1 | 44 | IPR004883 | Lateral organ boundaries, LOB |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009556 | Biological Process | microsporogenesis | ||||
GO:0009786 | Biological Process | regulation of asymmetric cell division | ||||
GO:0005634 | Cellular Component | nucleus |
Sequence ? help Back to Top |
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Protein Sequence Length: 255 aa Download sequence Send to blast |
MKSIIFQSYV REKNPVHGCL GVTQHLQYMI WLAEEELKAV NSQLQLYRSQ QNNNNSNGQN 60 HQNGHNQMVG EKQEDVTSQL DLGMGLPVNN NQSFFSPLPV PENQQQPQMS YTYSEVNNHG 120 YSPPAYTESC KEILNNDNAS LAWGQNRFPY HHHNNGFSNE DEHCNEMKNN NGVMAIQSQL 180 VNLQMVSNQQ EEEDDVHEYD EIHQFLKIID DRQSFVDTKE AYASSSGESL KERLDEIGEN 240 ELRNAATCFS LTSVN |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676719604 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013591366.1 | 1e-130 | PREDICTED: LOB domain-containing protein 27-like isoform X2 | ||||
Swissprot | Q9STS6 | 5e-76 | LBD27_ARATH; LOB domain-containing protein 27 | ||||
TrEMBL | A0A3N6PMZ1 | 1e-131 | A0A3N6PMZ1_BRACR; Uncharacterized protein | ||||
STRING | Bo1g072490.1 | 1e-129 | (Brassica oleracea) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM6303 | 27 | 46 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT3G47870.1 | 1e-76 | LOB domain-containing protein 27 |
Publications ? help Back to Top | |||
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