PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718964
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB_related
Protein Properties Length: 703aa    MW: 79021.9 Da    PI: 9.5083
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718964genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding25.62.8e-081559345
                     SS-HHHHHHHHHHHHHTTTT...-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding  3 rWTteEdellvdavkqlGgg...tWktIartmgkgRtlkqcksrwq 45
                     +WT+  d+++  a + + ++   +W  +ar +g g++++++k ++ 
        676718964 15 SWTAKQDKQFEMALATYDKDtpdRWQNVARAVG-GKSAEEVKRHYE 59
                     7********************************.**********96 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129310.7851166IPR017884SANT domain
SMARTSM007175.2E-91264IPR001005SANT/Myb domain
SuperFamilySSF466892.99E-111469IPR009057Homeodomain-like
PfamPF002493.9E-61558IPR001005SANT/Myb domain
CDDcd001675.60E-61662No hitNo description
PfamPF120374.6E-103125391IPR021911ATPase family AAA domain-containing protein 3, domain of unknown function DUF3523
SuperFamilySSF525405.65E-40425684IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3006.1E-38426650IPR027417P-loop containing nucleoside triphosphate hydrolase
CDDcd000091.42E-17453586No hitNo description
SMARTSM003822.0E-14455588IPR003593AAA+ ATPase domain
PfamPF000041.5E-25459586IPR003959ATPase, AAA-type, core
PROSITE patternPS006740558577IPR003960ATPase, AAA-type, conserved site
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005739Cellular Componentmitochondrion
GO:0003677Molecular FunctionDNA binding
GO:0005524Molecular FunctionATP binding
Sequence ? help Back to Top
Protein Sequence    Length: 703 aa     Download sequence    Send to blast
MASNSISTSR SSNSSWTAKQ DKQFEMALAT YDKDTPDRWQ NVARAVGGKS AEEVKRHYEL  60
LIRDVNDIES GRYPQPRLCS AAAIAAAFTS MSMSQNRVYA DSRFRFPFFS SSPPPPPSSD  120
SQTDNNSSKP ETKPDPDERK GSGFDPESLE RGAKALREIN SSPHSKQVFD LMRKQEKTRL  180
AELAAEKSHN EAIQANKDIE RQRKLAEDQR NLLQQQAQAK AQNLRYEDEL ARKRQQTDHE  240
AQRRHNVELV KMQEESSIRK EKARISTEEQ IQAQQRQTEK ERAELERETI RVKAMAEAEG  300
RAHEAKLTEE QNRRMLLDRI NGEREKWLAA INTTFSHIEG GVKALLTDRN KLIMTVGGVT  360
ALAAGVYTTR EGARVTWGYI NRILGQPSLI RESSMGRFPW AGSASQFKNK VSSFGKAASA  420
KGENPLDNVV LHPSLKKRIE HLARATANTK SHQAPFRNMM FYGPPGTGKT MVAREIARKS  480
GLDYAMMTGG DVAPLGAQAV TKIHEIFDWA KKSNKGLLLF IDEADAFLCE RNSTYMSEAQ  540
RSALNALLFR TGDQSRDIVL VLATNRPGDL DSAVTDRIDE VIEFPLPGED ERFKLLKLYL  600
NKYLTGEGDK DTNTKWSHLF KKQSQKITVE GDLTDQVIRE AAKKTEGFSG REIAKLVAGV  660
QAAVYGRPDC VLDSQLFEEI VDYKIQEHHQ RARLATEGGQ LFT
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2cjj_A2e-23676171RADIALIS
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718964
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018452426.10.0PREDICTED: ATPase family AAA domain-containing protein 3C-like
RefseqXP_018457342.10.0PREDICTED: ATPase family AAA domain-containing protein 3C-like
TrEMBLV4MDQ30.0V4MDQ3_EUTSA; Uncharacterized protein
STRINGXP_006409165.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM86622
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G18328.13e-32RAD-like 4