 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676718904 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 219aa MW: 25622.5 Da PI: 6.3803 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676718904 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 63.5 | 3e-20 | 61 | 114 | 4 | 57 |
-SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
Homeobox 4 RttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
++++++eq++ Le F ++++ e++e+LA++lgL+ rqV vWFqNrRa++k+
676718904 61 KRKLSDEQVKMLEMSFGDEHKLESERKERLASELGLDPRQVAVWFQNRRARWKN 114
45899***********************************************95 PP
|
| 2 | HD-ZIP_I/II | 122.8 | 1.7e-39 | 60 | 151 | 2 | 93 |
HD-ZIP_I/II 2 kkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
+kr+ls+eqvk+LE+sF e+kLe+erK++la+eLgl+prqvavWFqnrRAR+k+k+lE +y++Lk+++++++ e++rL++ev +L+e+l++
676718904 60 RKRKLSDEQVKMLEMSFGDEHKLESERKERLASELGLDPRQVAVWFQNRRARWKNKRLEDEYTKLKNEHENVVVEKCRLDSEVLHLKEQLHD 151
8****************************************************************************************986 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 219 aa
Download sequence Send
to blast |
MNSQNVNDHN LLLISQMYPN VYASSPQQGE SKPVRPRRRR KNKRVAMAEE GGDGSNGWFR 60
KRKLSDEQVK MLEMSFGDEH KLESERKERL ASELGLDPRQ VAVWFQNRRA RWKNKRLEDE 120
YTKLKNEHEN VVVEKCRLDS EVLHLKEQLH DAEREIQRLA QRVEGASSNS PISSSVSVEA 180
TQTKPFFGDY EVEYDGDGYE NLFYSPEYTT GLEWMSQFM
|
| Nucleic Localization
Signal ? help
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 |
| No. |
Start |
End |
Sequence |
| 1 | 34 | 44 | RPRRRRKNKRV |
| 2 | 35 | 42 | PRRRRKNK |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: By abscisic acid (ABA) and by salt stress. {ECO:0000269|PubMed:16055682}. |
