 |
Plant Transcription
Factor Database
|
Transcription Factor Information
|
Basic
Information? help
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| TF ID |
676718360 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
AP2 |
| Protein Properties |
Length: 410aa MW: 44872.2 Da PI: 7.5826 |
| Description |
AP2 family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676718360 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | AP2 | 40 | 9.9e-13 | 195 | 241 | 1 | 51 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaark 51
s+y+GV+ +k grW+A+ + +k+++lg f+++ eAa+a+++a+
676718360 195 SKYRGVTLHK-CGRWEARMGQF--L-GKKYIYLGLFDSEVEAARAYDKAAI 241
89********.7******5553..2.26**********99*********97 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0010228 | Biological Process | vegetative to reproductive phase transition of meristem |
| GO:0003677 | Molecular Function | DNA binding |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 410 aa
Download sequence Send
to blast |
MLDLNLDADS PESTQYGDSY ADRKTSDGGS GNRLEESGTS TSSVINADVA DEDSCSTRAF 60
TLNFDILKVG SSGGSSTRSW IDLSFDSHGE TKFVAPAPAP APVPAQVKKS RRGPRSRSSQ 120
YRGVTFYRRT GGFDTAHAAA RAYDRAAIKF RGVDADINFT LGDYEEDMKQ VQNLSKEEFV 180
HILRRQSTGF SRGSSKYRGV TLHKCGRWEA RMGQFLGKKY IYLGLFDSEV EAARAYDKAA 240
ISSNGREAVT NFELSSYQNE FNSDTNNEGG HDKLDLNLGI SLSPGNASKQ NGRLFQRGVN 300
LTIDNELMGK PVNTPLPYGS SDHRAYWNGA CPSYNNPVEG RATEKRSEAE GGMMSNWGWQ 360
RPGQTSAMRP QPPGAQPQLF SVAAASSGFS NFRQQPPNDN ASLGYFYPQP
|
| Functional Description ? help
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| Source |
Description |
| UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). Regulates negatively the transition to flowering time and confers flowering time delay. {ECO:0000250, ECO:0000269|PubMed:14555699}. |
| Regulation -- Description ? help
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| Source |
Description |
| UniProt | INDUCTION: Repressed by miR172a-2/EAT. {ECO:0000269|PubMed:14555699}. |
| Annotation --
Nucleotide ? help
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| Source |
Hit ID |
E-value |
Description |
| GenBank | AF003100 | 1e-105 | AF003100.1 Arabidopsis thaliana AP2 domain containing protein RAP2.7 mRNA, partial cds. |
| GenBank | AF325074 | 1e-105 | AF325074.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
| GenBank | AY050815 | 1e-105 | AY050815.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
| GenBank | AY091418 | 1e-105 | AY091418.1 Arabidopsis thaliana putative AP2 domain transcription factor (At2g28550) mRNA, complete cds. |
