PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676718210
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 854aa    MW: 94742.4 Da    PI: 9.2297
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676718210genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH25.42.6e-085393954
               HHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  9 ErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54
                r RR+ri ++f  L++++P        K++ +++L +A+ Y+k L
  676718210 53 ARERRHRISDRFKILQSMVPGG-----SKMDTVSMLDEAISYVKFL 93
               699*****************95.....5****************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.4344493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.55E-1349102IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.9E-115097IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.70E-105097No hitNo description
SMARTSM003531.6E-125099IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000108.3E-65493IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:3.40.50.3001.1E-4163183IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF525401.99E-14167310IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF136711.9E-13169277No hitNo description
Gene3DG3DSA:3.40.50.3001.3E-20184304IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.220.103.0E-4397432No hitNo description
SuperFamilySSF529491.63E-19446586No hitNo description
PROSITE profilePS5115412.948453632IPR002589Macro domain
SMARTSM005060.0014465600IPR002589Macro domain
Gene3DG3DSA:3.40.220.106.8E-17465572No hitNo description
PfamPF016612.2E-7488571IPR002589Macro domain
Gene3DG3DSA:3.40.50.3001.1E-4573605IPR027417P-loop containing nucleoside triphosphate hydrolase
SuperFamilySSF541979.19E-38642818IPR011146HIT-like domain
PROSITE profilePS5108410.384662771IPR011146HIT-like domain
PfamPF119695.4E-26667775No hitNo description
Gene3DG3DSA:3.30.428.105.1E-12670767IPR011146HIT-like domain
PROSITE patternPS008920744762IPR019808Histidine triad, conserved site
PfamPF162785.6E-10780834IPR032566Aprataxin, C2HE/C2H2/C2HC zinc finger
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006790Biological Processsulfur compound metabolic process
GO:0009150Biological Processpurine ribonucleotide metabolic process
GO:0046983Molecular Functionprotein dimerization activity
GO:0047627Molecular Functionadenylylsulfatase activity
Sequence ? help Back to Top
Protein Sequence    Length: 854 aa     Download sequence    Send to blast
MDHSSFRSQN PNSSPPTSSS SSSFHGRKGK IKGNTNQSRS TSTLSTDPQS VAARERRHRI  60
SDRFKILQSM VPGGSKMDTV SMLDEAISYV KFLKAQIWFH HNMLLFFNDH ETTSSCTYSP  120
AGVGEFEPRL FGYDDHYAPR TETYSEGMPL LTVTDSEYPM WFEKAKQIVV LLIGPPGSGK  180
STFCETVMQS SHRPWSRICQ DIINNGKSGT KAQCLKKSID SLKEGKSVFI DRCNLDREQR  240
SEFVKLGGPD VEVHAVVLEL PAQVCISRSV KRTGHEGNLQ GGRAAAVVNK MLQSKELPKV  300
NEGFARIMFC YNEASVENAV KTYSMLGPMD TLPSGCFGQK NSDTKSQPGI MKFFKKVNAV  360
PGSSSNEATE ATRTANEKKG NIRVSPTAML GSTDIRVATL AFPSISTADF QFDLEKASDI  420
IVETAEEFLP KIGSARLVLV DLSHASKILS LVKVKASHKN IDSARFFTFV GDITKLHSEG  480
GLHCNVIANA ANWRLKAGGG GVNAAIFKAA GPDLEAATRT RANTLLPGKA VVVPLPSTCP  540
LHNAEGITHV IHVLGPNMNP NRPNYLNNDY TKGCNTLREA YTSLFEGFLS IVQDQSKLPK  600
RNNQATMSDS GENVKEDSER LKKYKGTQDK AVANTLESGA VDDTRDSGKK MSKGWSSWAL  660
ALHSIAMYPE KHQNVVLESS DDIVVINDQY PKARKHVLVL ARQESLDGLE DVRRENLQLL  720
QEMHNVGMKW AKRFQDEGAS LIFRLGYHSV PSMRQLHLHV ISQDFESDHL KNKKHWNSFT  780
SSFFRDSVDV LEEVKSQGKA NVESEDVLKG ELRCNRCRSA HPNIPKLKSH IKTCRCQYPH  840
HLLQNNRLLV RPES
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5lw0_A2e-9439359331231Basic helix-loop-helix, putative, expressed
5lw0_B2e-9439359331231Basic helix-loop-helix, putative, expressed
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676718210
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_024011424.10.0LOW QUALITY PROTEIN: transcription factor bHLH140
SwissprotQ9M0410.0BH140_ARATH; Transcription factor bHLH140
TrEMBLD7M7380.0D7M738_ARALL; Basic helix-loop-helix family protein
STRINGBostr.6251s0101.1.p0.0(Boechera stricta)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM948599
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G01310.10.0APRATAXIN-like
Publications ? help Back to Top
  1. Heyndrickx KS,Vandepoele K
    Systematic identification of functional plant modules through the integration of complementary data sources.
    Plant Physiol., 2012. 159(3): p. 884-901
    [PMID:22589469]