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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676717690 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | WRKY | ||||||||
Protein Properties | Length: 262aa MW: 30252.2 Da PI: 6.6241 | ||||||||
Description | WRKY family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | WRKY | 73.3 | 3.2e-23 | 114 | 174 | 2 | 59 |
--SS-EEEEEEE--TT-SS-EEEEEE-ST...T---EEEEEE-SSSTTEEEEEEES--SS- CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsa...gCpvkkkversaedpkvveitYegeHnhe 59 +Dg+ WrKYGqK++k+s++ rsYY+C+++ +C++kk+v+ +++p + +tY g+H+++ 676717690 114 HDGFLWRKYGQKQIKESDHQRSYYKCAYTkdqNCEAKKQVQMIQNNPPLYSTTYFGHHTCQ 174 6**************************988899**************************97 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
Gene3D | G3DSA:2.20.25.80 | 1.0E-23 | 106 | 174 | IPR003657 | WRKY domain |
PROSITE profile | PS50811 | 19.267 | 108 | 176 | IPR003657 | WRKY domain |
SuperFamily | SSF118290 | 4.58E-23 | 110 | 175 | IPR003657 | WRKY domain |
SMART | SM00774 | 9.6E-34 | 113 | 175 | IPR003657 | WRKY domain |
Pfam | PF03106 | 4.4E-23 | 115 | 174 | IPR003657 | WRKY domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0009863 | Biological Process | salicylic acid mediated signaling pathway | ||||
GO:0042742 | Biological Process | defense response to bacterium | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding | ||||
GO:0043565 | Molecular Function | sequence-specific DNA binding |
Sequence ? help Back to Top |
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Protein Sequence Length: 262 aa Download sequence Send to blast |
MNSCQQKAME TLLHGHGCAN QLKLIMDHHA ESDSSMERED LAKSVLHCFS DALSILIDTN 60 DHHQNDDQSN NSSPQDSSPV LESSRKPLHK RGRKTSMAES SDYRRHESPN PIYHDGFLWR 120 KYGQKQIKES DHQRSYYKCA YTKDQNCEAK KQVQMIQNNP PLYSTTYFGH HTCQLHQAYA 180 TFPIDTSDPQ DSHMIRFDHP YSSTHQHEHQ NQNQIIHPKD EHMMSPTKAE EWSSPSEGMS 240 SEVAYAVEAF RFNPFRTSSD LS |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6ir8_A | 1e-14 | 115 | 174 | 10 | 69 | OsWRKY45 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
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Motif ID | Method | Source | Motif file |
MP00070 | PBM | Transfer from AT5G01900 | Download |
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Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676717690 |
Regulation -- Description ? help Back to Top | ||||||
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Source | Description | |||||
UniProt | INDUCTION: By salicylic acid. {ECO:0000269|PubMed:11449049}. |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | KF430069 | 0.0 | KF430069.1 Brassica rapa WRKY transcription factor 62 (WRKY62) mRNA, complete cds. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
Refseq | XP_013659595.1 | 1e-168 | probable WRKY transcription factor 62 | ||||
Swissprot | Q9LZV6 | 1e-144 | WRK62_ARATH; Probable WRKY transcription factor 62 | ||||
TrEMBL | A0A078FH00 | 1e-167 | A0A078FH00_BRANA; BnaA09g24840D protein | ||||
STRING | Bra023211.1-P | 1e-167 | (Brassica rapa) |
Orthologous Group ? help Back to Top | |||
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Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM14505 | 15 | 22 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT5G01900.1 | 1e-129 | WRKY DNA-binding protein 62 |