PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676716902
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family MYB
Protein Properties Length: 234aa    MW: 26045.5 Da    PI: 5.8071
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676716902genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding54.43e-171057148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WTteEd ll ++v ++G g W++++++ g++R++k+c++rw++yl
        676716902 10 KGAWTTEEDCLLRQCVDEYGEGKWHLVPSRAGLNRCRKSCRLRWLNYL 57
                     79********************************************97 PP
2Myb_DNA-binding46.48.9e-1563108148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ + +E +ll +++k+lG++ W++Ia +++ gRt++++k++w+++l
        676716902  63 RGKLSSDEVDLLSRLHKLLGNR-WSLIAGRLP-GRTANDVKNYWNTHL 108
                      78999*****************.*********.************996 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.0E-21560IPR009057Homeodomain-like
PROSITE profilePS5129425.452561IPR017930Myb domain
SuperFamilySSF466892.42E-277104IPR009057Homeodomain-like
SMARTSM007176.5E-15959IPR001005SANT/Myb domain
PfamPF002494.8E-161057IPR001005SANT/Myb domain
CDDcd001674.35E-111257No hitNo description
Gene3DG3DSA:1.10.10.602.0E-2161111IPR009057Homeodomain-like
SMARTSM007171.3E-1362110IPR001005SANT/Myb domain
PROSITE profilePS5129418.52562112IPR017930Myb domain
PfamPF002493.5E-1363108IPR001005SANT/Myb domain
CDDcd001673.59E-1067108No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 234 aa     Download sequence    Send to blast
MDALSNRLRK GAWTTEEDCL LRQCVDEYGE GKWHLVPSRA GLNRCRKSCR LRWLNYLKPS  60
IKRGKLSSDE VDLLSRLHKL LGNRWSLIAG RLPGRTANDV KNYWNTHLSK KPDSSCKTEM  120
EKGNPTGSAA TPAPKVDVIK LQPRSLCNNN SLSGVNGLPV VDIDDSITCS KYEETYELVE  180
DVMDGKSMWW ESLLEEIGGA DAVDPVAMAT DEAGTSLINS SSSTLDIEQL WSML
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A4e-2381145110B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Cis-element ? help Back to Top
SourceLink
PlantRegMap676716902
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankHQ3377921e-103HQ337792.1 Brassica rapa subsp. rapa cultivar Tsuda production of anthocyanin pigment 1 (PAP1) mRNA, complete cds.
GenBankKM4034501e-103KM403450.1 Brassica rapa cultivar Zi He anthocyanin R2R3-MYB transcription factor (MYB2) mRNA, complete cds.
GenBankKM4034511e-103KM403451.1 Brassica rapa cultivar Zi He anthocyanin R2R3-MYB transcription factor (MYB3) mRNA, complete cds.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_018461613.11e-121PREDICTED: transcription factor MYB114-like
SwissprotQ9FNV95e-90MY113_ARATH; Transcription factor MYB113
TrEMBLE5D8F51e-100E5D8F5_BRAOB; MYB2
STRINGBo6g100940.11e-100(Brassica oleracea)
STRINGXP_010513543.11e-99(Camelina sativa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM4282646
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-92myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]