PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 386aa MW: 44358.1 Da PI: 9.7982

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676716702	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	65.2	6.7e-21	32	76	7	51
HHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS SRF-TF 7 snrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51 s + +++kR+++++KKA+ LSvLC++ev+vi+++s+g+l ++++ 676716702 32 SLKAKSLTKRQETVFKKAYQLSVLCGIEVCVIYYGSDGELTTWPK 76 556679*************************************96 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	1.5E-4	15	77	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	1.96E-16	33	107	IPR002100	Transcription factor, MADS-box
CDD	cd00266	6.71E-16	34	101	No hit	No description
PROSITE profile	PS50066	11.872	34	78	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	3.2E-13	37	74	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-5	40	55	IPR002100	Transcription factor, MADS-box
PRINTS	PR00404	2.3E-5	55	76	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 386 aa Download sequence Send to blast
MASSSSFFPS SSSPTSKKAT KFSQTLFQKP SSLKAKSLTK RQETVFKKAY QLSVLCGIEV 60 CVIYYGSDGE LTTWPKDREK VKDMALRYSQ LSDMKRRKGR TYIEQLLEKI NKDDSKKDKK 120 KKKKKVLKLV SNYKYPDWDH RFDNCSVEQL TELIQSLERR QTIMQHRLRA VVESQRQRNM 180 HYTNMAGQEQ MITTTTPAMN HLQQHSNQFS MVLYNHESGT SQQTPVSTSD FNQSKSLAPL 240 PNSLTMYQNP NMGRYPMLLG TQETGMKEAL SMNMLPYNDS INTNYVNFFP NQFHQNSCKV 300 ENYSGFPGVQ ETGINNMNLK DYGGSLWAQG SEINGLQNMD MYGYKSNNNA NGFSHQFVQF 360 PTQRAAPQAF QYLDQSTQNT IPLYDI

Sequence ? help Back to Top

Protein Sequence Length: 386 aa Download sequence Send to blast

MASSSSFFPS SSSPTSKKAT KFSQTLFQKP SSLKAKSLTK RQETVFKKAY QLSVLCGIEV  60
CVIYYGSDGE LTTWPKDREK VKDMALRYSQ LSDMKRRKGR TYIEQLLEKI NKDDSKKDKK  120
KKKKKVLKLV SNYKYPDWDH RFDNCSVEQL TELIQSLERR QTIMQHRLRA VVESQRQRNM  180
HYTNMAGQEQ MITTTTPAMN HLQQHSNQFS MVLYNHESGT SQQTPVSTSD FNQSKSLAPL  240
PNSLTMYQNP NMGRYPMLLG TQETGMKEAL SMNMLPYNDS INTNYVNFFP NQFHQNSCKV  300
ENYSGFPGVQ ETGINNMNLK DYGGSLWAQG SEINGLQNMD MYGYKSNNNA NGFSHQFVQF  360
PTQRAAPQAF QYLDQSTQNT IPLYDI

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	115	123	KKDKKKKKK
2	118	124	KKKKKKK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676716702

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009146116.1	1e-164	PREDICTED: agamous-like MADS-box protein AGL103
Swissprot	Q9LSB2	1e-107	AG103_ARATH; Agamous-like MADS-box protein AGL103
TrEMBL	M4E0P4	1e-162	M4E0P4_BRARP; Uncharacterized protein
STRING	Bra022341.1-P	1e-163	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18650.1	1e-101	AGAMOUS-like 103

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]