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Plant Transcription
Factor Database
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Transcription Factor Information
|
Basic
Information? help
Back to Top |
| TF ID |
676715502 |
| Organism |
|
| Taxonomic ID |
|
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
| Family |
HD-ZIP |
| Protein Properties |
Length: 265aa MW: 30540.9 Da PI: 5.4187 |
| Description |
HD-ZIP family protein |
| Gene Model |
| Gene Model ID |
Type |
Source |
Coding Sequence |
| 676715502 | genome | VEGI | View CDS |
|
| Signature Domain? help Back to Top |
 |
| No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
| 1 | Homeobox | 54.1 | 2.6e-17 | 78 | 131 | 3 | 56 |
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS
Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56
k+++++ eql++Le+ Fe +++ +++ eLA+ lgL+ rq+ +WFqNrRa+ k
676715502 78 KKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSK 131
456899**********************************************99 PP
|
| 2 | HD-ZIP_I/II | 121.4 | 4.7e-39 | 77 | 169 | 1 | 93 |
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelke 93
ekkrrl+ eq+k+LE++Fe +kLe++rK elar+Lglqprq+a+WFqnrRAR ktkqlE+dy+aLkr+y++lk+ene+L +++++L++++++
676715502 77 EKKRRLNMEQLKTLEKNFELGNKLESDRKLELARALGLQPRQIAIWFQNRRARSKTKQLERDYDALKRQYESLKDENETLLTQNHKLQAQVMA 169
69**************************************************************************************99975 PP
|
| Gene Ontology ? help Back to Top |
| GO Term |
GO Category |
GO Description |
| GO:0006355 | Biological Process | regulation of transcription, DNA-templated |
| GO:0009739 | Biological Process | response to gibberellin |
| GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
| GO:0043565 | Molecular Function | sequence-specific DNA binding |
| Sequence ? help Back to Top |
| Protein Sequence Length: 265 aa
Download sequence Send
to blast |
MSCNNSLAFF PANFSLQNHH QEEEDHSQSL LPSCTLPQDF HGFIGKRSPM TNNLEGFCNL 60
EMNGEEEFSD DGSKMGEKKR RLNMEQLKTL EKNFELGNKL ESDRKLELAR ALGLQPRQIA 120
IWFQNRRARS KTKQLERDYD ALKRQYESLK DENETLLTQN HKLQAQVMAL KSREPIESIN 180
LNKDTEGSCS NRSENISGDI RPPEIDSQFT GGHPPSSPTT TTMQFFQNSS SEHRMVKEEN 240
SISNMFCGMD DQSGFWPWLD QPHYN
|
| Nucleic Localization
Signal ? help
Back to Top |
 |
| No. |
Start |
End |
Sequence |
| 1 | 125 | 133 | RRARSKTKQ |
| Functional Description ? help
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| Source |
Description |
| UniProt | Probable transcription factor. {ECO:0000250}. |
| Regulation -- Description ? help
Back to Top |
| Source |
Description |
| UniProt | INDUCTION: By gibberellic acid (GA3). {ECO:0000269|PubMed:17387478}. |
| Publications
? help Back to Top |
- Ding Y, et al.
Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
BMC Plant Biol., 2013. 13: p. 229
[PMID:24377444] - Kazama D,Kurusu T,Mitsuda N,Ohme-Takagi M,Tada Y
Involvement of elevated proline accumulation in enhanced osmotic stress tolerance in Arabidopsis conferred by chimeric repressor gene silencing technology.
Plant Signal Behav, 2014. 9(3): p. e28211
[PMID:24614501] - Ribone PA,Capella M,Chan RL
Functional characterization of the homeodomain leucine zipper I transcription factor AtHB13 reveals a crucial role in Arabidopsis development.
J. Exp. Bot., 2015. 66(19): p. 5929-43
[PMID:26136262] - Kazama D, et al.
Identification of Chimeric Repressors that Confer Salt and Osmotic Stress Tolerance in Arabidopsis.
Plants (Basel), 2013. 2(4): p. 769-85
[PMID:27137403]
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