![]() |
PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
|
Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
---|---|---|---|---|---|---|---|---|---|
TF ID | 676714868 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
|
||||||||
Family | ERF | ||||||||
Protein Properties | Length: 243aa MW: 26639.2 Da PI: 4.8525 | ||||||||
Description | ERF family protein | ||||||||
Gene Model |
|
Signature Domain? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | AP2 | 61.1 | 2.6e-19 | 38 | 88 | 1 | 55 |
AP2 1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 +gy+GVr + +g+Wv+eIr+p++ + r++lg+f tae+Aa+a++aa++ ++g 676714868 38 PGYRGVRMRT-WGKWVSEIREPRK---KSRIWLGTFSTAEMAARAHDAAALTIKG 88 79*****998.**********843...6**********************99876 PP |
Protein Features ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Database | Entry ID | E-value | Start | End | InterPro ID | Description |
CDD | cd00018 | 7.34E-23 | 38 | 98 | No hit | No description |
Pfam | PF00847 | 6.1E-13 | 38 | 88 | IPR001471 | AP2/ERF domain |
SuperFamily | SSF54171 | 7.85E-22 | 39 | 97 | IPR016177 | DNA-binding domain |
PROSITE profile | PS51032 | 23.288 | 39 | 96 | IPR001471 | AP2/ERF domain |
SMART | SM00380 | 2.3E-36 | 39 | 102 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-11 | 40 | 51 | IPR001471 | AP2/ERF domain |
Gene3D | G3DSA:3.30.730.10 | 4.4E-32 | 40 | 97 | IPR001471 | AP2/ERF domain |
PRINTS | PR00367 | 8.3E-11 | 62 | 78 | IPR001471 | AP2/ERF domain |
Gene Ontology ? help Back to Top | ||||||
---|---|---|---|---|---|---|
GO Term | GO Category | GO Description | ||||
GO:0006355 | Biological Process | regulation of transcription, DNA-templated | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0003700 | Molecular Function | transcription factor activity, sequence-specific DNA binding |
Sequence ? help Back to Top |
---|
Protein Sequence Length: 243 aa Download sequence Send to blast |
MTESSISSVK RSSPVEEENH QDQESHRTNN KKRVRTDPGY RGVRMRTWGK WVSEIREPRK 60 KSRIWLGTFS TAEMAARAHD AAALTIKGTS AVLNFPELAT FLPRPASSSP RDVQAAAAVA 120 AAMDFSSSSS STVVISDPTT VVPETHLSSS SSYSTSTSSS SLSPSSEEAA SSTAEELSEI 180 VKLPSLETSY DEPWSEFVYV DPAYPPSSPW YFNNCYSFYY HSDENGTSMG EPFESSNFGP 240 LFP |
3D Structure ? help Back to Top | ||||||
---|---|---|---|---|---|---|
PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
5wx9_A | 3e-18 | 40 | 96 | 15 | 72 | Ethylene-responsive transcription factor ERF096 |
Search in ModeBase |
Functional Description ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Description | |||||
UniProt | Probably acts as a transcriptional activator. Binds to the GCC-box pathogenesis-related promoter element. May be involved in the regulation of gene expression by stress factors and by components of stress signal transduction pathways (By similarity). {ECO:0000250}. |
Binding Motif ? help Back to Top | |||
---|---|---|---|
Motif ID | Method | Source | Motif file |
MP00245 | DAP | Transfer from AT1G77200 | Download |
![]() |
Cis-element ? help Back to Top | |
---|---|
Source | Link |
PlantRegMap | 676714868 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | Retrieve |
Annotation -- Protein ? help Back to Top | |||||||
---|---|---|---|---|---|---|---|
Source | Hit ID | E-value | Description | ||||
Refseq | XP_010471905.1 | 1e-122 | PREDICTED: ethylene-responsive transcription factor ERF037 | ||||
Swissprot | O80654 | 1e-109 | ERF37_ARATH; Ethylene-responsive transcription factor ERF037 | ||||
TrEMBL | A0A3N6RK58 | 1e-119 | A0A3N6RK58_BRACR; Uncharacterized protein | ||||
STRING | XP_010471905.1 | 1e-122 | (Camelina sativa) |
Orthologous Group ? help Back to Top | |||
---|---|---|---|
Lineage | Orthologous Group ID | Taxa Number | Gene Number |
Malvids | OGEM185 | 28 | 283 |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
---|---|---|---|---|---|---|
Hit ID | E-value | Description | ||||
AT1G77200.1 | 5e-44 | ERF family protein |