PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713788
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family C3H
Protein Properties Length: 301aa    MW: 34142.1 Da    PI: 8.022
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713788genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH24.93.6e-08129148626
                -SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   6 CrffartGtCkyGdrCkFaHg 26 
                C+ f++ GtC++Gd+C +aHg
  676713788 129 CPEFRK-GTCRRGDSCEYAHG 148
                9*****.*************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS501036.31575112IPR000571Zinc finger, CCCH-type
SMARTSM003566.3E-4123149IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010311.488124150IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.103.3E-4129150IPR000571Zinc finger, CCCH-type
PfamPF006423.1E-6129148IPR000571Zinc finger, CCCH-type
SMARTSM0035624158181IPR000571Zinc finger, CCCH-type
PROSITE profilePS501036.099158182IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0061157Biological ProcessmRNA destabilization
GO:0005737Cellular Componentcytoplasm
GO:0003677Molecular FunctionDNA binding
GO:0003727Molecular Functionsingle-stranded RNA binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 301 aa     Download sequence    Send to blast
MMIGENNYMP HPTIHIPQWD QINDPTTTIS SPFSSSVNFN DYPNSPSQFL DSFASLYRYL  60
PSNDSDSSSG DKSPLSDSFT CDEFRMYEFK VRRCSRGRSH DWTECPFAHP GEKARRRDPR  120
KFHYSGTGCP EFRKGTCRRG DSCEYAHGVF ECWLHPSRYR TQPCKDGTSC RRRICFFAHT  180
HEQLRVLTNS VSSPTSILIS PPFSPPSESP PLSPRKGELI ASMRKMQLNG GSWCSQPVRS  240
GLGLHVSSSL RSSQGSTWPG VREFDIWDDA CEEIPAMELV ESGKELRARM YARLSRDNSL  300
G
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713788
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_006408830.11e-158zinc finger CCCH domain-containing protein 23
SwissprotO823071e-150C3H23_ARATH; Zinc finger CCCH domain-containing protein 23
TrEMBLA0A1J3FL651e-160A0A1J3FL65_NOCCA; Zinc finger CCCH domain-containing protein 23 (Fragment)
STRINGXP_006408830.11e-157(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM12492788
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G25900.21e-132C3H family protein
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]