PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713104
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family B3
Protein Properties Length: 2558aa    MW: 286298 Da    PI: 5.9515
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713104genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B350.43.9e-1621182217198
                 EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS
         B3    1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94  
                 f+k+l+ sd+++ grlv+pkk+ae++   ++++ ++ lt+ d+ g++W++++++  +++s++y+l+ G     ++ +L++gD+v+F++ +  e++l +
  676713104 2118 FEKILSVSDAGRVGRLVVPKKCAEAFlpPISHTDGVPLTVHDSMGKEWTFRFRFwaNNNSRMYFLE-GVTPCIQSMQLQAGDTVIFSRLD-PERKLIM 2213
                 89**************************777889999***************99888888888888.********************665.5555666 PP

                 EEE- CS
         B3   95 kvfr 98  
                 ++++
  676713104 2214 GFRK 2217
                 6555 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF509781.47E-1523128IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.4E-1627129IPR015943WD40/YVTN repeat-like-containing domain
PfamPF128941.7E-2328127IPR024977Anaphase-promoting complex subunit 4, WD40 domain
SMARTSM003204.9E-45189IPR001680WD40 repeat
SMARTSM00320120106151IPR001680WD40 repeat
SuperFamilySSF509781.47E-15188201IPR017986WD40-repeat-containing domain
Gene3DG3DSA:2.130.10.103.4E-16189202IPR015943WD40/YVTN repeat-like-containing domain
PfamPF128961.0E-56252454IPR024790Anaphase-promoting complex subunit 4 long domain
PROSITE profilePS5014635.602881980IPR001206Diacylglycerol kinase, catalytic domain
SuperFamilySSF1113312.83E-558821046IPR016064NAD kinase/diacylglycerol kinase-like domain
SMARTSM000461.9E-78851018IPR001206Diacylglycerol kinase, catalytic domain
PfamPF007812.0E-25885986IPR001206Diacylglycerol kinase, catalytic domain
SuperFamilySSF1113312.83E-5510871206IPR016064NAD kinase/diacylglycerol kinase-like domain
PROSITE profilePS5014642.28113451487IPR001206Diacylglycerol kinase, catalytic domain
SuperFamilySSF1113313.49E-6213461539IPR016064NAD kinase/diacylglycerol kinase-like domain
SMARTSM000465.3E-1013491481IPR001206Diacylglycerol kinase, catalytic domain
PfamPF007817.5E-3213491483IPR001206Diacylglycerol kinase, catalytic domain
SuperFamilySSF1113313.49E-6215801687IPR016064NAD kinase/diacylglycerol kinase-like domain
Gene3DG3DSA:2.40.330.105.6E-2721152222IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019365.62E-2021152217IPR015300DNA-binding pseudobarrel domain
CDDcd100177.06E-2121162217No hitNo description
PROSITE profilePS5086311.15221182219IPR003340B3 DNA binding domain
SMARTSM010194.0E-1821182219IPR003340B3 DNA binding domain
PfamPF023622.4E-1321182217IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0009793Biological Processembryo development ending in seed dormancy
GO:0048481Biological Processplant ovule development
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0005515Molecular Functionprotein binding
GO:0016301Molecular Functionkinase activity
Sequence ? help Back to Top
Protein Sequence    Length: 2558 aa     Download sequence    Send to blast
MESEEGESSI PFQLQFDKPI PFQIKIAEWN PEKDLLAMVT EDSKILLHRF NWQRLWTISP  60
GRPVTSLCWR PDGKAIAVGL EDGTIELHDV EASFIFEANL CFHDENGKLL RSLKPHAVAV  120
VCLNWEEDGQ SNTDEIGKVS VYEDRTSRFF PPAPRAPKMP GLVAGDSSFM DDGEDSLAEL  180
SNTSFRKFNI LCSGDRDGSI CFNIFGIFQI GKIVALSKDL CRLVVMCTGE LRDCDIEPRE  240
EKLSVQDLHG LHCLTMDTSI FWKRKYELHQ VAQQASNIED LTEVIRESLS VMSKQWADAM  300
KTFHDKFQSL STLIIDNGLE SSPQEEFLSL LGGARISPAL NQFLVNSLGE VGVKRVLKSV  360
CGTGKELQLV VLDHLRPAAE IIGFRMGELK GLSRWRARYQ GIGLDERLLD EATENAGLLL  420
VQVQRFMMIL SSVVQQFSNF LNWVLKSIKY LMQEPNDQPM SYNSELLVVF LKFLYDQDPV  480
KDLVELSEAD DDIEIDLKTI ERVKQLIQFG GFSDTDFLRR TLAKEFQRME SSFKMALQMP  540
FTTISRKISC MKLLPLCPLQ LSTTQTRTTI PMSLSFYKNE LSADTPCESG YTDYISFQVP  600
DEAFPDIQNC IGIAKGFKQN SNNEKNGYTS LEAVMLSVPN GYHCVDLSLY KDKELVILMN  660
ETSASPEGSG EACMMVVQIG DLPFISISRS SCLNQWELDD LKGSIVYLEM ENEKVRKVPH  720
STIAPLAVSA SRGVACVFAE RRRALVYILE EDEDEEEVAE DNYQRISLSH EGCCVMASAV  780
IIIDLVFIDG EFGMVKLTAD GVLQASEYGH SRYWTVKKDV LGFVVEGNEI RIKTVVERGE  840
GICCGEYGGD YVRKDFVFEP LSEDARNRFC YKLRQYLDSL GRPKRLLVFV NPFGGKKSAK  900
KIFEKEVEPL FDDADIQLDV QDTKYQLHAK EMVRSMDLSK YDGIVCVSGD GVLVEVVNGL  960
LQRADWKTAS KLPIGIIPAG HTRSLDVATI SQGTTKFFSV LMLAWGLVAD IDIESEEFRW  1020
MGSARINFYA LQRILCLRQY NGRILFVPAP GFESYGQPTN CSVDQESVVS DKVFGYQGPD  1080
TKFEDLEWRE IKGPFVSVWL HNVPWGAEDT LAAPGAKFSD GFLDLIVLKN CPKLALLSLM  1140
TQISDGTHVQ SPYVSYLKVK AFALEPGTIV DEPDKEGIID ADGEVVSVDF PSLVESKTDC  1200
LEIVKLGRFE TICFVLRALT NDETLLSITM DLQPENDQLS SPAMMSDRVL VNGVITPLTL  1260
TADGELRWTE SGRRKSTVEK EILSFVVEEG NKKVRVKTLV ERRGGICCGG SGGDYARKDF  1320
VFEPLSDESR KLWCDKLHHH LESLGRPKRL LVFVNPFGGK KSARKIFVEE VKPLFEDAHI  1380
QLEIQETKYQ LHAKEMVRSM DVSKYDGIVC VSGDGILVEV VNGLLERADW RTALKLPIGM  1440
VPAGSGNGMI KSLLEPVGHP CSATAATISI IRGHTRSLDV ATISQGTTKF FSVLMLAWGL  1500
VADIDIESEK FRWMGGARFD VYGLQRIICL RQYNGRIRFV PAPGFESYGL PASCSVDKES  1560
YASDKALGYQ GPDTKIEDLE WREMKGPFVS VWLHNVPWGA ENTLAAPNAK FSDGFLDLIV  1620
MKDCPKLALL SLMTKLSDGT HVQSPYVSYL KVKAFVLEPG ARIDEAEKEG IIDSDGEVLA  1680
RGRRSYKCEQ MALMSYDKLQ ITVDQVIKLS FFSSRVLMLP FPSSSSSSMP SSSSSSSYTG  1740
RFCFNRECPD FKLDHYRPGW RLRTGDFADL CNRCASAYEQ GKFCDIFHQR ASGWRCCESC  1800
GKRIHCGCIV SASAFMLLDA GGIECLACAR KKFALASWCN SLVHVFQGPN FRPPPSFLFQ  1860
SPISEKFKDL SINWGSSTRS YRPHNLLGPS VLQCGLYNSG DGYEFSQPTL KDNATAYSTE  1920
KQRGMNDLME KLMSENSKSH TGDILNNQKG GPNCQVPPRP NVNVYHPLIS FKEGPFGAQL  1980
AVPVTTPIET NGHSGLGGRF IWHARNSSPL SHLPNDLNGG ADSPFESKNW NFGTHLDTPG  2040
KYQVVPRYWP KVPYKDQAQQ NLSNEYPYCL LEITLEYNFA YSPFVLFLLL LFFLFLAFDD  2100
KSMLGCRVGS ESVAIPLFEK ILSVSDAGRV GRLVVPKKCA EAFLPPISHT DGVPLTVHDS  2160
MGKEWTFRFR FWANNNSRMY FLEGVTPCIQ SMQLQAGDTV IFSRLDPERK LIMGFRKASV  2220
AQSSYQVNNS RETCTNGDAE PIDMHSPSGK KKSSMMITRS NRQTVEKGDL SELKLTWEEA  2280
QGFILPPPNL TPSIVKIEGI EFEEYERCDH ARIDTLGARN YSLKHKNIFR ALYDVGRIQI  2340
RCTGTSHGPN SEGMLPDIEN FRSTCSANKR RLAEQNDEEA KDEADGLLMS PKTTSKHPRH  2400
RNGCTCIVCI QSPSGISPKH GRRCSCTVCD VVKRRRHSLL LRRKMKKQIE KEDKAHKELE  2460
SPNCDEELDQ SGNNSGNTSK NPEHHSPTKA QINLNFQPEK DEESLPRSNT TTKGKSLHHD  2520
DTSFKPPSSS SAHSQIDKLG EGKLDINIVI ADTTTSSK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
6j9a_A3e-492115222121127B3 domain-containing transcription repressor VAL1
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713104
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAK2288710.0AK228871.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-19-J05.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
TrEMBLA0A087GFT40.0A0A087GFT4_ARAAL; Uncharacterized protein
STRINGA0A087GFT40.0(Arabis alpina)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21550.10.0VP1/ABI3-like 3