PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
Basic Information? help Back to Top | |||||||||
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TF ID | 676713104 | ||||||||
Organism | |||||||||
Taxonomic ID | |||||||||
Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family | B3 | ||||||||
Protein Properties | Length: 2558aa MW: 286298 Da PI: 5.9515 | ||||||||
Description | B3 family protein | ||||||||
Gene Model |
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Signature Domain? help Back to Top | |||||||
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No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
1 | B3 | 50.4 | 3.9e-16 | 2118 | 2217 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE....EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliy..rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvv 94 f+k+l+ sd+++ grlv+pkk+ae++ ++++ ++ lt+ d+ g++W++++++ +++s++y+l+ G ++ +L++gD+v+F++ + e++l + 676713104 2118 FEKILSVSDAGRVGRLVVPKKCAEAFlpPISHTDGVPLTVHDSMGKEWTFRFRFwaNNNSRMYFLE-GVTPCIQSMQLQAGDTVIFSRLD-PERKLIM 2213 89**************************777889999***************99888888888888.********************665.5555666 PP EEE- CS B3 95 kvfr 98 ++++ 676713104 2214 GFRK 2217 6555 PP |
Protein Features ? help Back to Top | ||||||
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Database | Entry ID | E-value | Start | End | InterPro ID | Description |
SuperFamily | SSF50978 | 1.47E-15 | 23 | 128 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 3.4E-16 | 27 | 129 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF12894 | 1.7E-23 | 28 | 127 | IPR024977 | Anaphase-promoting complex subunit 4, WD40 domain |
SMART | SM00320 | 4.9E-4 | 51 | 89 | IPR001680 | WD40 repeat |
SMART | SM00320 | 120 | 106 | 151 | IPR001680 | WD40 repeat |
SuperFamily | SSF50978 | 1.47E-15 | 188 | 201 | IPR017986 | WD40-repeat-containing domain |
Gene3D | G3DSA:2.130.10.10 | 3.4E-16 | 189 | 202 | IPR015943 | WD40/YVTN repeat-like-containing domain |
Pfam | PF12896 | 1.0E-56 | 252 | 454 | IPR024790 | Anaphase-promoting complex subunit 4 long domain |
PROSITE profile | PS50146 | 35.602 | 881 | 980 | IPR001206 | Diacylglycerol kinase, catalytic domain |
SuperFamily | SSF111331 | 2.83E-55 | 882 | 1046 | IPR016064 | NAD kinase/diacylglycerol kinase-like domain |
SMART | SM00046 | 1.9E-7 | 885 | 1018 | IPR001206 | Diacylglycerol kinase, catalytic domain |
Pfam | PF00781 | 2.0E-25 | 885 | 986 | IPR001206 | Diacylglycerol kinase, catalytic domain |
SuperFamily | SSF111331 | 2.83E-55 | 1087 | 1206 | IPR016064 | NAD kinase/diacylglycerol kinase-like domain |
PROSITE profile | PS50146 | 42.281 | 1345 | 1487 | IPR001206 | Diacylglycerol kinase, catalytic domain |
SuperFamily | SSF111331 | 3.49E-62 | 1346 | 1539 | IPR016064 | NAD kinase/diacylglycerol kinase-like domain |
SMART | SM00046 | 5.3E-10 | 1349 | 1481 | IPR001206 | Diacylglycerol kinase, catalytic domain |
Pfam | PF00781 | 7.5E-32 | 1349 | 1483 | IPR001206 | Diacylglycerol kinase, catalytic domain |
SuperFamily | SSF111331 | 3.49E-62 | 1580 | 1687 | IPR016064 | NAD kinase/diacylglycerol kinase-like domain |
Gene3D | G3DSA:2.40.330.10 | 5.6E-27 | 2115 | 2222 | IPR015300 | DNA-binding pseudobarrel domain |
SuperFamily | SSF101936 | 5.62E-20 | 2115 | 2217 | IPR015300 | DNA-binding pseudobarrel domain |
CDD | cd10017 | 7.06E-21 | 2116 | 2217 | No hit | No description |
PROSITE profile | PS50863 | 11.152 | 2118 | 2219 | IPR003340 | B3 DNA binding domain |
SMART | SM01019 | 4.0E-18 | 2118 | 2219 | IPR003340 | B3 DNA binding domain |
Pfam | PF02362 | 2.4E-13 | 2118 | 2217 | IPR003340 | B3 DNA binding domain |
Gene Ontology ? help Back to Top | ||||||
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GO Term | GO Category | GO Description | ||||
GO:0009793 | Biological Process | embryo development ending in seed dormancy | ||||
GO:0048481 | Biological Process | plant ovule development | ||||
GO:0005634 | Cellular Component | nucleus | ||||
GO:0003677 | Molecular Function | DNA binding | ||||
GO:0005515 | Molecular Function | protein binding | ||||
GO:0016301 | Molecular Function | kinase activity |
Sequence ? help Back to Top |
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Protein Sequence Length: 2558 aa Download sequence Send to blast |
MESEEGESSI PFQLQFDKPI PFQIKIAEWN PEKDLLAMVT EDSKILLHRF NWQRLWTISP 60 GRPVTSLCWR PDGKAIAVGL EDGTIELHDV EASFIFEANL CFHDENGKLL RSLKPHAVAV 120 VCLNWEEDGQ SNTDEIGKVS VYEDRTSRFF PPAPRAPKMP GLVAGDSSFM DDGEDSLAEL 180 SNTSFRKFNI LCSGDRDGSI CFNIFGIFQI GKIVALSKDL CRLVVMCTGE LRDCDIEPRE 240 EKLSVQDLHG LHCLTMDTSI FWKRKYELHQ VAQQASNIED LTEVIRESLS VMSKQWADAM 300 KTFHDKFQSL STLIIDNGLE SSPQEEFLSL LGGARISPAL NQFLVNSLGE VGVKRVLKSV 360 CGTGKELQLV VLDHLRPAAE IIGFRMGELK GLSRWRARYQ GIGLDERLLD EATENAGLLL 420 VQVQRFMMIL SSVVQQFSNF LNWVLKSIKY LMQEPNDQPM SYNSELLVVF LKFLYDQDPV 480 KDLVELSEAD DDIEIDLKTI ERVKQLIQFG GFSDTDFLRR TLAKEFQRME SSFKMALQMP 540 FTTISRKISC MKLLPLCPLQ LSTTQTRTTI PMSLSFYKNE LSADTPCESG YTDYISFQVP 600 DEAFPDIQNC IGIAKGFKQN SNNEKNGYTS LEAVMLSVPN GYHCVDLSLY KDKELVILMN 660 ETSASPEGSG EACMMVVQIG DLPFISISRS SCLNQWELDD LKGSIVYLEM ENEKVRKVPH 720 STIAPLAVSA SRGVACVFAE RRRALVYILE EDEDEEEVAE DNYQRISLSH EGCCVMASAV 780 IIIDLVFIDG EFGMVKLTAD GVLQASEYGH SRYWTVKKDV LGFVVEGNEI RIKTVVERGE 840 GICCGEYGGD YVRKDFVFEP LSEDARNRFC YKLRQYLDSL GRPKRLLVFV NPFGGKKSAK 900 KIFEKEVEPL FDDADIQLDV QDTKYQLHAK EMVRSMDLSK YDGIVCVSGD GVLVEVVNGL 960 LQRADWKTAS KLPIGIIPAG HTRSLDVATI SQGTTKFFSV LMLAWGLVAD IDIESEEFRW 1020 MGSARINFYA LQRILCLRQY NGRILFVPAP GFESYGQPTN CSVDQESVVS DKVFGYQGPD 1080 TKFEDLEWRE IKGPFVSVWL HNVPWGAEDT LAAPGAKFSD GFLDLIVLKN CPKLALLSLM 1140 TQISDGTHVQ SPYVSYLKVK AFALEPGTIV DEPDKEGIID ADGEVVSVDF PSLVESKTDC 1200 LEIVKLGRFE TICFVLRALT NDETLLSITM DLQPENDQLS SPAMMSDRVL VNGVITPLTL 1260 TADGELRWTE SGRRKSTVEK EILSFVVEEG NKKVRVKTLV ERRGGICCGG SGGDYARKDF 1320 VFEPLSDESR KLWCDKLHHH LESLGRPKRL LVFVNPFGGK KSARKIFVEE VKPLFEDAHI 1380 QLEIQETKYQ LHAKEMVRSM DVSKYDGIVC VSGDGILVEV VNGLLERADW RTALKLPIGM 1440 VPAGSGNGMI KSLLEPVGHP CSATAATISI IRGHTRSLDV ATISQGTTKF FSVLMLAWGL 1500 VADIDIESEK FRWMGGARFD VYGLQRIICL RQYNGRIRFV PAPGFESYGL PASCSVDKES 1560 YASDKALGYQ GPDTKIEDLE WREMKGPFVS VWLHNVPWGA ENTLAAPNAK FSDGFLDLIV 1620 MKDCPKLALL SLMTKLSDGT HVQSPYVSYL KVKAFVLEPG ARIDEAEKEG IIDSDGEVLA 1680 RGRRSYKCEQ MALMSYDKLQ ITVDQVIKLS FFSSRVLMLP FPSSSSSSMP SSSSSSSYTG 1740 RFCFNRECPD FKLDHYRPGW RLRTGDFADL CNRCASAYEQ GKFCDIFHQR ASGWRCCESC 1800 GKRIHCGCIV SASAFMLLDA GGIECLACAR KKFALASWCN SLVHVFQGPN FRPPPSFLFQ 1860 SPISEKFKDL SINWGSSTRS YRPHNLLGPS VLQCGLYNSG DGYEFSQPTL KDNATAYSTE 1920 KQRGMNDLME KLMSENSKSH TGDILNNQKG GPNCQVPPRP NVNVYHPLIS FKEGPFGAQL 1980 AVPVTTPIET NGHSGLGGRF IWHARNSSPL SHLPNDLNGG ADSPFESKNW NFGTHLDTPG 2040 KYQVVPRYWP KVPYKDQAQQ NLSNEYPYCL LEITLEYNFA YSPFVLFLLL LFFLFLAFDD 2100 KSMLGCRVGS ESVAIPLFEK ILSVSDAGRV GRLVVPKKCA EAFLPPISHT DGVPLTVHDS 2160 MGKEWTFRFR FWANNNSRMY FLEGVTPCIQ SMQLQAGDTV IFSRLDPERK LIMGFRKASV 2220 AQSSYQVNNS RETCTNGDAE PIDMHSPSGK KKSSMMITRS NRQTVEKGDL SELKLTWEEA 2280 QGFILPPPNL TPSIVKIEGI EFEEYERCDH ARIDTLGARN YSLKHKNIFR ALYDVGRIQI 2340 RCTGTSHGPN SEGMLPDIEN FRSTCSANKR RLAEQNDEEA KDEADGLLMS PKTTSKHPRH 2400 RNGCTCIVCI QSPSGISPKH GRRCSCTVCD VVKRRRHSLL LRRKMKKQIE KEDKAHKELE 2460 SPNCDEELDQ SGNNSGNTSK NPEHHSPTKA QINLNFQPEK DEESLPRSNT TTKGKSLHHD 2520 DTSFKPPSSS SAHSQIDKLG EGKLDINIVI ADTTTSSK |
3D Structure ? help Back to Top | ||||||
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PDB ID | Evalue | Query Start | Query End | Hit Start | Hit End | Description |
6j9a_A | 3e-49 | 2115 | 2221 | 21 | 127 | B3 domain-containing transcription repressor VAL1 |
Search in ModeBase |
Cis-element ? help Back to Top | |
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Source | Link |
PlantRegMap | 676713104 |
Regulation -- PlantRegMap ? help Back to Top | ||||||
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Source | Upstream Regulator | Target Gene | ||||
PlantRegMap | Retrieve | - |
Annotation -- Nucleotide ? help Back to Top | ||||||
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Source | Hit ID | E-value | Description | |||
GenBank | AK228871 | 0.0 | AK228871.1 Arabidopsis thaliana mRNA for hypothetical protein, clone: RAFL16-19-J05. |
Annotation -- Protein ? help Back to Top | |||||||
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Source | Hit ID | E-value | Description | ||||
TrEMBL | A0A087GFT4 | 0.0 | A0A087GFT4_ARAAL; Uncharacterized protein | ||||
STRING | A0A087GFT4 | 0.0 | (Arabis alpina) |
Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
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Hit ID | E-value | Description | ||||
AT4G21550.1 | 0.0 | VP1/ABI3-like 3 |