PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676713052
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 296aa    MW: 33860.6 Da    PI: 4.4945
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676713052genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH18.53.6e-061922301255
                HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                R +++ +++  L++l+ +      +K + a++L  A+eYIk Lq
  676713052 192 RKEKLGDRITALQQLVSPF-----GKTDTASVLHDAIEYIKFLQ 230
                677888999*******998.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.909180229IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474599.29E-11190238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.58E-6190234No hitNo description
SMARTSM003530.0072191235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.103.2E-9194235IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 296 aa     Download sequence    Send to blast
MKEEFKTTED CTGTWWSLPE GMFSDCSLPR STEISIDIGG FEWQNIDNLD ANTYNNSHCS  60
TLVSNTNLDS TSQIYVWNQY DHPEEERLDP INSFLKGLFD SSEQLSVPSV KPELLESFHF  120
FDDVFLDESR TVSVFDHVIG DKREQDIQAW KSLLTCERAR EKTEDLEDIE SLPPLKRPRL  180
ETPSQFPSFK VRKEKLGDRI TALQQLVSPF GKTDTASVLH DAIEYIKFLQ TQISASSIPH  240
LNCRGYGEQK QCLDKNTHDE DCSARQDLRS RGLCLMPISS TFSTSPPHLD TSSFWN
Cis-element ? help Back to Top
SourceLink
PlantRegMap676713052
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankKF0322991e-134KF032299.1 Sisymbrium irio self-incompatibility gene locus, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013653898.11e-166transcription factor bHLH103-like
RefseqXP_013669203.11e-166transcription factor bHLH103-like
SwissprotQ8VZ221e-144BH103_ARATH; Transcription factor bHLH103
TrEMBLR9S9W60.0R9S9W6_SISIR; Putative transcription factor bHLH103
STRINGBra013520.1-P1e-165(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM147121418
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G21340.11e-146bHLH family protein
Publications ? help Back to Top
  1. Kawabe A,Hansson B,Forrest A,Hagenblad J,Charlesworth D
    Comparative gene mapping in Arabidopsis lyrata chromosomes 6 and 7 and A. thaliana chromosome IV: evolutionary history, rearrangements and local recombination rates.
    Genet. Res., 2006. 88(1): p. 45-56
    [PMID:17014743]
  2. Chantha SC,Herman AC,Platts AE,Vekemans X,Schoen DJ
    Secondary evolution of a self-incompatibility locus in the Brassicaceae genus Leavenworthia.
    PLoS Biol., 2013. 11(5): p. e1001560
    [PMID:23690750]