PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676712270
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 576aa    MW: 64459.6 Da    PI: 4.6539
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676712270genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM158.23.5e-49171432128
        NAM   2 ppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkgel 99 
                +pGfrFhPtdeelvv+yLk+k+ g+kl++ ++i  vd+ykv+P +Lp  + +k+++++w+fF++r++ky++  r++r t++gyWkatgkd+ ++  +++ 
  676712270  17 APGFRFHPTDEELVVYYLKRKICGRKLRI-NAIGVVDVYKVDPTELPglSVLKSGDRQWFFFTPRSRKYPNAARSSRGTATGYWKATGKDRIIVY-NSRS 114
                69***************************.89***************644888899**************************************9.999* PP

        NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128
                vglkktLvfy+grap+ge+tdWvmhey++
  676712270 115 VGLKKTLVFYRGRAPNGERTDWVMHEYTM 143
                ***************************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5100553.19316166IPR003441NAC domain
SuperFamilySSF1019411.23E-5517166IPR003441NAC domain
PfamPF023654.6E-2618142IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0010200Biological Processresponse to chitin
GO:0045893Biological Processpositive regulation of transcription, DNA-templated
GO:1900057Biological Processpositive regulation of leaf senescence
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 576 aa     Download sequence    Send to blast
MANTSPDTCL KGGKFSAPGF RFHPTDEELV VYYLKRKICG RKLRINAIGV VDVYKVDPTE  60
LPGLSVLKSG DRQWFFFTPR SRKYPNAARS SRGTATGYWK ATGKDRIIVY NSRSVGLKKT  120
LVFYRGRAPN GERTDWVMHE YTMDEGELGR CKNAKEYYAL YKLYKKSGAG PKNGEEYGAP  180
FQEEEWLDDD DSEEADTVAV PDDHVVRYEN NRRVDDGLFC NPVNLQLDDL DKLLNDIPNA  240
PGVAQRQMNE LSGVLQGNSK EEIQSTLLNN SSGEFLSPWK VEKFLPNCQP YNSHWSIQSN  300
MRSANSFEAT EVSSGFNTSG VEPFVFEKED YIEMDDLLIP ELGASSTEKP SQFSNLGEFG  360
NDNEFDDLFH DVSMSLDIET VFQGTSTDSF ANNGRQQFIY QQQFQEQNLE NQVNSFMDPN  420
PNGNQFTDDM WFNDTQADLY DQPQSSFVAF ASPSSGLMPE STNPTVSVNA QNQEDQNGGE  480
TRSQFSSALW ALMDSIPSTP ASACEGPLNR TFVRMSSLSR IRFNGTSVTT SKVTVAKKRI  540
GNRGFLLLSI VGALCAIFWV FIIATVGALG RRSVLS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
3ulx_A8e-451814317140Stress-induced transcription factor NAC1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional activator activated by proteolytic cleavage through regulated intramembrane proteolysis (RIP) (By similarity). Transcriptional activator that promotes leaf senescence by up-regulating senescence-associated genes in response to developmental and stress-induced senescence signals. Functions in salt and oxidative stress-responsive signaling pathways. Binds to the promoter of NAC029/NAP and NAC059/ORS1 genes (PubMed:23926065). {ECO:0000250|UniProtKB:Q949N0, ECO:0000269|PubMed:23926065}.
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00178DAPTransfer from AT1G34180Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676712270
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, salt, drought stress and methyl methanesulfonate (MMS) treatment. {ECO:0000269|PubMed:17158162}.
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009145148.10.0PREDICTED: NAC domain-containing protein 16
RefseqXP_009145149.10.0PREDICTED: NAC domain-containing protein 16
RefseqXP_009145150.10.0PREDICTED: NAC domain-containing protein 16
RefseqXP_009145151.10.0PREDICTED: NAC domain-containing protein 16
SwissprotA4FVP60.0NAC16_ARATH; NAC domain-containing protein 16
TrEMBLA0A078GTE20.0A0A078GTE2_BRANA; BnaA05g18430D protein
TrEMBLA0A397ZHR70.0A0A397ZHR7_BRACM; Uncharacterized protein
TrEMBLM4F0460.0M4F046_BRARP; Uncharacterized protein
STRINGBra034439.1-P0.0(Brassica rapa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM28122667
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G34180.10.0NAC domain containing protein 16
Publications ? help Back to Top
  1. Duarte JM, et al.
    Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis.
    Mol. Biol. Evol., 2006. 23(2): p. 469-78
    [PMID:16280546]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Sakuraba Y,Han SH,Lee SH,Hörtensteiner S,Paek NC
    Arabidopsis NAC016 promotes chlorophyll breakdown by directly upregulating STAYGREEN1 transcription.
    Plant Cell Rep., 2016. 35(1): p. 155-66
    [PMID:26441053]