PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

WRKY

Protein Properties

Length: 320aa MW: 36761.5 Da PI: 8.7703

Description

WRKY family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676711936	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	WRKY	97.9	6.5e-31	113	169	2	58
--SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS CS WRKY 2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnh 58 dDgy+WrKYGqK++k+s++prsYY+Ct + C++kk+vers+++p++ +itYeg H h 676711936 113 DDGYKWRKYGQKSIKNSPNPRSYYKCTNPICNAKKQVERSTDEPNAYIITYEGFHLH 169 8******************************************************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.20.25.80	3.9E-28	106	169	IPR003657	WRKY domain
PROSITE profile	PS50811	26.59	107	169	IPR003657	WRKY domain
SuperFamily	SSF118290	2.62E-25	111	169	IPR003657	WRKY domain
SMART	SM00774	4.4E-36	112	171	IPR003657	WRKY domain
Pfam	PF03106	3.3E-25	113	169	IPR003657	WRKY domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 320 aa Download sequence Send to blast
MAEEELSEWT RRYEINAVDE LFVNEPPLFF LPQEHDRRLM PNEDYITKKV VSSKLDSSPR 60 IQDIADALAM VEPLTHPVQQ IPKSTVPILG KITWSKVDRY TIKVKNNCKR MSDDGYKWRK 120 YGQKSIKNSP NPRSYYKCTN PICNAKKQVE RSTDEPNAYI ITYEGFHLHF TYPFFLPNSM 180 HSPNKRPKKV KHDARYKTLE INKNSQIQEE NKQAELVEPT YQNHPAHENL KDELFFPFDR 240 CGGRQGLLED VVAPVMKNIL TNDGVSVASW SSLSSYTSSS GSSSKTNSPP LSPSSLSWTT 300 NFNIKFSDDD ILNSIGSRKF

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1wj2_A	1e-19	113	169	18	74	Probable WRKY transcription factor 4
2lex_A	1e-19	113	169	18	74	Probable WRKY transcription factor 4
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Functional Description ? help Back to Top
Source	Description
UniProt	Transcription factor. Interacts specifically with the W box (5'-(T)TGAC[CT]-3'), a frequently occurring elicitor-responsive cis-acting element (By similarity). {ECO:0000250}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676711936

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_009114005.2	1e-134	PREDICTED: probable WRKY transcription factor 49
Swissprot	Q9FHR7	1e-121	WRK49_ARATH; Probable WRKY transcription factor 49
TrEMBL	A0A397XUN3	1e-133	A0A397XUN3_BRACM; Uncharacterized protein
STRING	Bra027480.1-P	1e-133	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM9405	26	37

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G43290.1	1e-122	WRKY DNA-binding protein 49