PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

M-type_MADS

Protein Properties

Length: 434aa MW: 48894.4 Da PI: 7.0083

Description

M-type_MADS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676711806	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SRF-TF	61.2	1.2e-19	12	60	2	50
---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE CS SRF-TF 2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeys 50 +++++s + + + +R+ +i+KKA+EL +LC++e++vi ++++g+l +++ 676711806 12 SSSSYSLAATNLNNRLSTIFKKAQELTTLCGVEACVIQYGPDGELNTWP 60 799*********************************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SMART	SM00432	0.0093	10	62	IPR002100	Transcription factor, MADS-box
CDD	cd00266	3.86E-14	20	87	No hit	No description
PROSITE profile	PS50066	9.321	21	63	IPR002100	Transcription factor, MADS-box
Pfam	PF00319	2.1E-11	23	59	IPR002100	Transcription factor, MADS-box
SuperFamily	SSF55455	4.58E-13	23	95	IPR002100	Transcription factor, MADS-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 434 aa Download sequence Send to blast
MRPPHNSSSS SSSSSYSLAA TNLNNRLSTI FKKAQELTTL CGVEACVIQY GPDGELNTWP 60 EERDKLRDLA LKYIKLDKAK RRKKSVDLYG FLNKMKEQNK MTNSAKKAKR NFEDLKYPIS 120 DHYTPHQISQ LIQSLERSYS ILQKRHFLES QNQAKTNFED HHQQSSNPTQ FTMNSALPQG 180 SGLKNNLLTQ ELCVYGQNNN SRHHSVPNTQ DYSELPAVQE SGIMKKEPYG CDQNMCLGNM 240 NINNFQHPYL SNTQGCSALP SELQASVSNY GLNQLMQMGN INNFTHPYVS NTQGCSALPS 300 ELQASVGNYG LNQLMQMGNF NHFTHPCVSN TQECSGLPSE LQASANNYGL NQLMQHERYS 360 FDQNMSTIDI TKSNVLNSVS DDFTFNFPDM PSSSLFNFDE NRPLQLHIPN DDSDISLITN 420 CQNQTGGKAI YLMK

Sequence ? help Back to Top

Protein Sequence Length: 434 aa Download sequence Send to blast

MRPPHNSSSS SSSSSYSLAA TNLNNRLSTI FKKAQELTTL CGVEACVIQY GPDGELNTWP  60
EERDKLRDLA LKYIKLDKAK RRKKSVDLYG FLNKMKEQNK MTNSAKKAKR NFEDLKYPIS  120
DHYTPHQISQ LIQSLERSYS ILQKRHFLES QNQAKTNFED HHQQSSNPTQ FTMNSALPQG  180
SGLKNNLLTQ ELCVYGQNNN SRHHSVPNTQ DYSELPAVQE SGIMKKEPYG CDQNMCLGNM  240
NINNFQHPYL SNTQGCSALP SELQASVSNY GLNQLMQMGN INNFTHPYVS NTQGCSALPS  300
ELQASVGNYG LNQLMQMGNF NHFTHPCVSN TQECSGLPSE LQASANNYGL NQLMQHERYS  360
FDQNMSTIDI TKSNVLNSVS DDFTFNFPDM PSSSLFNFDE NRPLQLHIPN DDSDISLITN  420
CQNQTGGKAI YLMK

Functional Description ? help Back to Top
Source	Description
UniProt	Probable transcription factor that may function in the maintenance of the proper function of the central cell in pollen tube attraction. {ECO:0000305\|PubMed:26462908}.

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676711806

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_018479659.1	6e-87	PREDICTED: agamous-like MADS-box protein AGL75, partial
Swissprot	Q9FLL0	2e-67	AGL75_ARATH; Agamous-like MADS-box protein AGL75
TrEMBL	A0A078I552	4e-81	A0A078I552_BRANA; BnaA04g09910D protein
STRING	Bra025607.1-P	1e-80	(Brassica rapa)

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM566	20	126

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G41200.1	1e-69	AGAMOUS-like 75

Publications ? help Back to Top
Zhang S, et al. FERTILIZATION-INDEPENDENT SEED-Polycomb Repressive Complex 2 Plays a Dual Role in Regulating Type I MADS-Box Genes in Early Endosperm Development. Plant Physiol., 2018. 177(1): p. 285-299 [PMID:29523711]