PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676711528
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family NAC
Protein Properties Length: 626aa    MW: 71338.5 Da    PI: 6.5125
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676711528genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM179.39.8e-5661341129
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp.k.kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlskkge 98 
                +ppGfrFhPtdeelv +yLk+k++g+++el e+i+e+d+yk+ePwdLp k  + +++ ew+fFs+rd+ky++g+r+nratk+gyWkatgkd++v+s +++
  676711528   6 MPPGFRFHPTDEELVIYYLKRKINGRTIEL-EIIPEIDLYKCEPWDLPgKsLLPSKDLEWFFFSPRDRKYPNGSRTNRATKAGYWKATGKDRKVTS-HSR 103
                79****************************.99***************6434555777**************************************.999 PP

        NAM  99 lvglkktLvfykgrapkgektdWvmheyrle 129
                +vg+kktLv+y+grap+g++tdWvmheyrle
  676711528 104 TVGTKKTLVYYRGRAPHGSRTDWVMHEYRLE 134
                *****************************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019413.66E-644156IPR003441NAC domain
PROSITE profilePS5100561.0256156IPR003441NAC domain
PfamPF023652.3E-297133IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 626 aa     Download sequence    Send to blast
MAPVSMPPGF RFHPTDEELV IYYLKRKING RTIELEIIPE IDLYKCEPWD LPGKSLLPSK  60
DLEWFFFSPR DRKYPNGSRT NRATKAGYWK ATGKDRKVTS HSRTVGTKKT LVYYRGRAPH  120
GSRTDWVMHE YRLEEQECDS KSGIQDAYAL CRVFKKSALA NKLEEQQYGM KKKKGTTNSE  180
QSTSSTCLYS DGMYENLDNS GYPVSPGLTQ FGNIPSSDMD TIENKWSRFM SHDTSFNLQE  240
QSQFCSQYGT ISYPPSKVEI ALECARLQNR MLPPALPLHV EDLTQGEYLG NNVTNDTDEM  300
LSKIIALAQA SNDPRNSLGS WEVASSSGNY HGDFNYSGEN ISGSWVEANM KAIDMQEHDG  360
RLKEEKTVEN LRWVGVPSKE LEKSFIEDST VVPIEDIWSY RRDDQEHEHQ DGLGINNNGD  420
VDDAYTLEFS EHEHNANISE TINNTNHDAT SSPRFEMVKK VEVSHGMFVT TRQVTNTFFQ  480
QIVPSQTVIV YINPTGDKKC CSEMTPTEEV HVLKQINPRI DSIISKILGP WRKLAYVIGF  540
VPRLLLMHCV HQGGSSNKNQ HNEGYCNDQE TILMMRDALV RKNIWKKKKY KCMVDEQGLR  600
VQDSFMLKKL GLSLAIILAV STMCLI
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A1e-56116212171NO APICAL MERISTEM PROTEIN
1ut4_B1e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_A1e-56116212171NO APICAL MERISTEM PROTEIN
1ut7_B1e-56116212171NO APICAL MERISTEM PROTEIN
3swm_A1e-56116215174NAC domain-containing protein 19
3swm_B1e-56116215174NAC domain-containing protein 19
3swm_C1e-56116215174NAC domain-containing protein 19
3swm_D1e-56116215174NAC domain-containing protein 19
3swp_A1e-56116215174NAC domain-containing protein 19
3swp_B1e-56116215174NAC domain-containing protein 19
3swp_C1e-56116215174NAC domain-containing protein 19
3swp_D1e-56116215174NAC domain-containing protein 19
4dul_A1e-56116212171NAC domain-containing protein 19
4dul_B1e-56116212171NAC domain-containing protein 19
Search in ModeBase
Binding Motif ? help Back to Top
Motif ID Method Source Motif file
MP00212DAPTransfer from AT1G65910Download
Motif logo
Cis-element ? help Back to Top
SourceLink
PlantRegMap676711528
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieveRetrieve
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankCP0026842e-98CP002684.1 Arabidopsis thaliana chromosome 1 sequence.
GenBankF12P192e-98AC009513.2 Sequence of BAC F12P19 from Arabidopsis thaliana chromosome 1, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_009127458.10.0PREDICTED: LOW QUALITY PROTEIN: NAC domain-containing protein 86
TrEMBLV4KFM30.0V4KFM3_EUTSA; Uncharacterized protein
STRINGXP_006391326.10.0(Eutrema salsugineum)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM101122632
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G65910.10.0NAC domain containing protein 28