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Plant Transcription
Factor Database
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Transcription Factor Information
Basic
Information? help
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TF ID |
676711032 |
Organism |
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Taxonomic ID |
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Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
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Family |
C2H2 |
Protein Properties |
Length: 467aa MW: 51001 Da PI: 8.2686 |
Description |
C2H2 family protein |
Gene Model |
Gene Model ID |
Type |
Source |
Coding Sequence |
676711032 | genome | VEGI | View CDS |
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Signature Domain? help Back to Top |
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No. |
Domain |
Score |
E-value |
Start |
End |
HMM Start |
HMM End |
1 | zf-C2H2 | 15 | 7e-05 | 66 | 86 | 3 | 23 |
ETTTTEEESSHHHHHHHHHHT CS
zf-C2H2 3 CpdCgksFsrksnLkrHirtH 23
C+ Cgk F r nL+ H r H
676711032 66 CEVCGKGFQRDQNLQLHRRGH 86
*******************88 PP
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Gene Ontology ? help Back to Top |
GO Term |
GO Category |
GO Description |
GO:0010150 | Biological Process | leaf senescence |
GO:0045893 | Biological Process | positive regulation of transcription, DNA-templated |
GO:0048510 | Biological Process | regulation of timing of transition from vegetative to reproductive phase |
GO:0048573 | Biological Process | photoperiodism, flowering |
GO:0003676 | Molecular Function | nucleic acid binding |
GO:0046872 | Molecular Function | metal ion binding |
Sequence ? help Back to Top |
Protein Sequence Length: 467 aa
Download sequence Send
to blast |
MTGEVLQTVS SGSGFAPSSS TLDHDESLIN PPLVKKKRNL PGNPDPEAEV IALSPKTLMA 60 TNRFLCEVCG KGFQRDQNLQ LHRRGHNLPW KLKQRTSKEV RKRVYVCPEK TCVHHHSSRA 120 LGDLTGIKKH FCRKHGEKKW TCEKCAKRYA VHSDYKAHSK TCGTREYRCD CGTIFSRRDS 180 FITHRAFCDA LAEETAKINA ASHLNGLSPA GAAGINLNYQ YLMGTLNPPL QPFVPQPPTN 240 QNHHHHFLPP PPSSSSSLSL WMGQDIAAPQ TQQQDYEWVF GNAKAVPAGC IDNNNNNNNH 300 DDLITLTANA SSTTITTTTL SVPSLFSSDQ TQSANANANM SATALLQKAA EIGANSTTAT 360 SNEPSAIFKS FPLKSSDPPN YDSGEKFFAL FGSNNNIGVM SHSHEQDMEN ARNDVTVASA 420 MDELQNYPWK RRKVDGGGEG GGGGQTRDFL GVGVQTLCHP SSINGWI
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Functional Description ? help
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Source |
Description |
UniProt | Transcription activator that binds to the DNA sequence 5'-CTTTTGTCC-3' (PubMed:21265895, PubMed:25929516). Regulates photoperiodic flowering by modulating sugar transport and metabolism (PubMed:21265895, PubMed:25929516). Regulates SUS1 and SUS4 (PubMed:21265895). Transcription factor that regulates tissue boundaries and asymmetric cell division (PubMed:25829440). Contributes to the sequestration of 'SHORT-ROOT' to the nucleus (PubMed:25829440). {ECO:0000269|PubMed:21265895, ECO:0000269|PubMed:25829440, ECO:0000269|PubMed:25929516}. |
Regulation -- Description ? help
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Source |
Description |
UniProt | INDUCTION: Up-regulated by 'SHORT-ROOT' (SHR)(PubMed:16640459). Strongly down-regulated by sugar deprivation, but not regulated by day-length. {ECO:0000269|PubMed:16640459}. |