PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

676710830

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

LBD

Protein Properties

Length: 192aa MW: 21649.3 Da PI: 4.3341

Description

LBD family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676710830	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF260	85.5	7.5e-27	5	106	1	100
DUF260 1 aCaaCkvlrrkCakdCvlapyfpaeqpkkfanvhklFGasnvlkllkal..peeeredamsslvyeAearardPvyGavgvilklqqqleqlkaelallk 98 +C++Ck+ +++C+++C++ fp+++p+kf v ++FG +nv k++++ + er +++sl+yeAear++dP++G vg+++ + l++lk+++++ k 676710830 5 PCSVCKFFNNDCSDECIFKASFPSTEPEKFDRVDRVFGGENVFKFMTNPnlNSWERGLVATSLCYEAEARIQDPISGYVGIFSVFKDMLNNLKEKINSEK 104 7*******************************************9862266679*************************************99887 PP DUF260 99 ee 100 +e 676710830 105 DE 106 76 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50891	19.542	4	107	IPR004883	Lateral organ boundaries, LOB
Pfam	PF03195	6.3E-25	5	102	IPR004883	Lateral organ boundaries, LOB

Sequence ? help Back to Top
Protein Sequence Length: 192 aa Download sequence Send to blast
MALVPCSVCK FFNNDCSDEC IFKASFPSTE PEKFDRVDRV FGGENVFKFM TNPNLNSWER 60 GLVATSLCYE AEARIQDPIS GYVGIFSVFK DMLNNLKEKI NSEKDELAAI VGPERVPQFS 120 NIPVCDHFLG TRASLNEFID NMEELNDAER NQLKRLPVDQ AHMIVEEIVY RRENQEIGDD 180 HGNAATSGES VA

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5ly0_A	2e-22	2	107	8	111	LOB family transfactor Ramosa2.1
5ly0_B	2e-22	2	107	8	111	LOB family transfactor Ramosa2.1
Search in ModeBase

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676710830

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Orthologous Group ? help Back to Top
Lineage	Orthologous Group ID	Taxa Number	Gene Number
Malvids	OGEM4525	14	55

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G35900.1	2e-52	LOB domain-containing protein 35