PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID 676710680
Organism
Sisymbrium irio
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium
Family bHLH
Protein Properties Length: 229aa    MW: 26150.6 Da    PI: 4.7756
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
676710680genomeVEGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH43.36.7e-145699755
               HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
                 Er+RR+++N++++ Lr+++P+      +K++Ka+i + A+ YI+ Lq
  676710680 56 VSERNRRQKLNQRLFALRSVVPNI-----TKMDKASIIKDAISYIQGLQ 99
               57*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088816.1774998IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.88E-1751115IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000837.64E-135299No hitNo description
Gene3DG3DSA:4.10.280.103.3E-1755114IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003534.1E-1455104IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.9E-115699IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MNHIDQEFNN YWETNSFLQN EDFEYDSWPL EEAISGSYDS SSPDGAGSSP ASKNIVSERN  60
RRQKLNQRLF ALRSVVPNIT KMDKASIIKD AISYIQGLQY EETKLEAEIR ELESTPKSSL  120
SFSKDFDRDL LVPVTSKKMK QLDSGSSRSL IEVLELKVTF MGERTVVVNV TCNKRADTMV  180
KLCEVFESLN LKILTSNLNS FSGMIFNTVF IETTWTFLVD LKQDLIRVN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5gnj_A1e-1447108263Transcription factor MYC2
5gnj_B1e-1447108263Transcription factor MYC2
5gnj_E1e-1447108263Transcription factor MYC2
5gnj_F1e-1447108263Transcription factor MYC2
5gnj_G1e-1447108263Transcription factor MYC2
5gnj_I1e-1447108263Transcription factor MYC2
5gnj_M1e-1447108263Transcription factor MYC2
5gnj_N1e-1447108263Transcription factor MYC2
Search in ModeBase
Cis-element ? help Back to Top
SourceLink
PlantRegMap676710680
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankAY0866660.0AY086666.1 Arabidopsis thaliana clone 266884 mRNA, complete sequence.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_013712821.11e-148transcription factor bHLH35-like
SwissprotQ2HIV91e-140BH035_ARATH; Transcription factor bHLH35
TrEMBLA0A3P6EEA31e-146A0A3P6EEA3_BRAOL; Uncharacterized protein
STRINGBo9g130890.11e-146(Brassica oleracea)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
MalvidsOGEM63672745
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G57150.11e-128bHLH family protein