PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Protein Features |

Cis-element |

Regulation |

Basic Information? help Back to Top

TF ID

676710418

Organism

Sisymbrium irio

Taxonomic ID

3730

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; malvids; Brassicales; Brassicaceae; Sisymbrieae; Sisymbrium

Family

GeBP

Protein Properties

Length: 999aa MW: 112419 Da PI: 8.9171

Description

GeBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
676710418	genome	VEGI	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF573	74.6	1.7e-23	192	273	2	97
DUF573 2 lfqrlwseeDeivlLqGlidfkaktgkspsddidafyefvkksisfkvsksqlveKirrLKkKfkkkvkkaksgkepsfskehdqkifelskkiWg 97 +fqr+wseeDei+ L Gl+d+k+ tg++p+d+++ k+q+veK+r L+kK++++ k k+g+ep+fsk+h++k+f+lsk++Wg 676710418 192 YFQRVWSEEDEISALEGLLDCKKVTGVNPYDETN--------------IKTQVVEKLRGLRKKYENNLGKGKKGEEPTFSKPHYRKAFDLSKSVWG 273 8**************************99987..............689******************************************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF04504	1.1E-19	193	273	IPR007592	Protein of unknown function DUF573
SuperFamily	SSF50249	1.18E-19	752	878	IPR012340	Nucleic acid-binding, OB-fold
CDD	cd04476	3.05E-17	753	901	No hit	No description
Pfam	PF08646	3.3E-13	761	897	IPR013955	Replication factor A, C-terminal
Gene3D	G3DSA:2.40.50.140	8.2E-14	771	897	IPR012340	Nucleic acid-binding, OB-fold

Sequence ? help Back to Top
Protein Sequence Length: 999 aa Download sequence Send to blast
MVKIALFCTS VKISRLVSTI CSRIFEGSAT GWRLLGIHMC GVMMNLKAGR LLNVLNNGLE 60 RSSFCAHVYS DSLDVEFLLY CMSNSDFRAV SSVSDCGWAA ADVFGGALNC FHLLYNVENY 120 SETEKKHPFK KNPRSSTVKS VVAKKKQDSK KVKPLAKSAT KKRSFSETNG AAVSTNAKRV 180 KRSSGEETKE NYFQRVWSEE DEISALEGLL DCKKVTGVNP YDETNIKTQV VEKLRGLRKK 240 YENNLGKGKK GEEPTFSKPH YRKAFDLSKS VWGPGGMALD SVVKSNGKSK KSRKSSKKVE 300 PVTQELYSPN GKSCDNEVAN KGEASCITEL YAFLKLLACF GVDDLSARQG WSMLASEDKR 360 RFEEQWKVLQ LRELDFYSQK SGFLHEVSSF WNICGFINIK EANLKVKMKK RAYDLGEEKK 420 VGLCTACTSN KHNNKKVSNL GYIYLLYNCP VYSPSTAYHS TAYHSTAYHE ITSSSFSMAG 480 VDFVALSDET THLPFNDLRL GRSRQQVVCR LVRFWDSRNV TRDNEFMDIS LLLLDEKSFV 540 VGRCTNMYKI TKSPFVIRFV DHTVVAPVQP SISIEGVMFS IRNVDHLQAL ANTNLELPDV 600 VGQIRFMQGS HLDDPTSTER VVVRDVTVCL SLWDDVAANF RTHMLSENHL QSIMVVTTVN 660 RQLFGERSLY YCLIYTSGDS LKPHSNAGNL FLNSTPSTRF YFDPTIDAIT KFRRRMDING 720 DTTNFKRADT TESLGKLETV TICELQKYIS RSIEEIQDAN FLCKATVERV LQTNGWSYKS 780 CGSCNRKLER NGSALRCNRC VSSKITGVVR YRVEFSVTDR EGNATFVVFD SEMMRQTSKT 840 AAALHSVPQN DDGKIPPCLE SFVGKTYVFK IRIRVSPFHF TPNHTTFTVS TMTEHNINEV 900 QVEVFFPKHK NQPYISHRAL YTSITFLIHD VKQEEATVGE MIIEPEATPT TTDSPHDSPG 960 ISVEGSCSVP ISQGGPSRRV NVQEGNDYVG VSTPKRQRE

Sequence ? help Back to Top

Protein Sequence Length: 999 aa Download sequence Send to blast

MVKIALFCTS VKISRLVSTI CSRIFEGSAT GWRLLGIHMC GVMMNLKAGR LLNVLNNGLE  60
RSSFCAHVYS DSLDVEFLLY CMSNSDFRAV SSVSDCGWAA ADVFGGALNC FHLLYNVENY  120
SETEKKHPFK KNPRSSTVKS VVAKKKQDSK KVKPLAKSAT KKRSFSETNG AAVSTNAKRV  180
KRSSGEETKE NYFQRVWSEE DEISALEGLL DCKKVTGVNP YDETNIKTQV VEKLRGLRKK  240
YENNLGKGKK GEEPTFSKPH YRKAFDLSKS VWGPGGMALD SVVKSNGKSK KSRKSSKKVE  300
PVTQELYSPN GKSCDNEVAN KGEASCITEL YAFLKLLACF GVDDLSARQG WSMLASEDKR  360
RFEEQWKVLQ LRELDFYSQK SGFLHEVSSF WNICGFINIK EANLKVKMKK RAYDLGEEKK  420
VGLCTACTSN KHNNKKVSNL GYIYLLYNCP VYSPSTAYHS TAYHSTAYHE ITSSSFSMAG  480
VDFVALSDET THLPFNDLRL GRSRQQVVCR LVRFWDSRNV TRDNEFMDIS LLLLDEKSFV  540
VGRCTNMYKI TKSPFVIRFV DHTVVAPVQP SISIEGVMFS IRNVDHLQAL ANTNLELPDV  600
VGQIRFMQGS HLDDPTSTER VVVRDVTVCL SLWDDVAANF RTHMLSENHL QSIMVVTTVN  660
RQLFGERSLY YCLIYTSGDS LKPHSNAGNL FLNSTPSTRF YFDPTIDAIT KFRRRMDING  720
DTTNFKRADT TESLGKLETV TICELQKYIS RSIEEIQDAN FLCKATVERV LQTNGWSYKS  780
CGSCNRKLER NGSALRCNRC VSSKITGVVR YRVEFSVTDR EGNATFVVFD SEMMRQTSKT  840
AAALHSVPQN DDGKIPPCLE SFVGKTYVFK IRIRVSPFHF TPNHTTFTVS TMTEHNINEV  900
QVEVFFPKHK NQPYISHRAL YTSITFLIHD VKQEEATVGE MIIEPEATPT TTDSPHDSPG  960
ISVEGSCSVP ISQGGPSRRV NVQEGNDYVG VSTPKRQRE

Cis-element ? help Back to Top
Source	Link
PlantRegMap	676710418

Regulation -- PlantRegMap ? help Back to Top
Source	Upstream Regulator	Target Gene
PlantRegMap	Retrieve	-

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G11510.1	6e-52	DNA-binding storekeeper protein-related transcriptional regulator